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Filter reads based on taxonomy assignment from OneCodex.

Project description

# Metasort

A Digital Health Hack Weekend Project using OneCodex API.

Filter reads based on taxonomy assignment from OneCodex.

Upload a Fast(a/q) file and download individual files sorted by species.

## CLI

set your OneCodex API key

export ONE_CODEX_API_KEY=f8xxxxxxxxxxx78

source venv/bin/activate pip install metasort

metasort seq.fa /path/to/outdir

## Web

Usage:

pip install -r requirements python webapp.py

Live demo here:

[https://genome-sort.herokuapp.com/](https://genome-sort.herokuapp.com/)

Project details


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metasort-0.3.1.tar.gz (5.5 kB view hashes)

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