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Utilities for the MetaSUB Consortium

Project description

MetaSUB Utilities Updates

Utilities for the MetaSUB Consortium

  • Free software: MIT license


A collection of utilites to manage the MetaSUB project.

Most of the tools in this package involve uploading or downloading data.

pip install metasub_utils

Downloading Data From Wasabi

To download data or assemblies from wasabi you will need API credentials. Please contact David Danko ( to acquire these keys.

Wasabi is a clone of amazon S3. To use Wasabi you will need to install the AWS-CLI

Once you have installed the aws command line tool you need to configure an account.

$ aws configure --profile wasabi
AWS Access Key ID [None]: `your access key`
AWS Secret Access Key [None]: `your secret key`
Default region name [None]:
Default output format [None]:

Once your account is configured you can use this utility package to download files. The following commands will be most useful.

$ metasub wasabi download-contigs --help
$ metasub wasabi download-unassembled-data --help

Note that all download commands dryrun by default. You will need to add the –wetrun flag to actually download data.


This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.


0.1.0 (2018-07-30)

  • First release on PyPI.

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