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Project description

mfeprimer-py3

Python3 version initiative for command line scripts of MFEprimer-2.0

Using pip:

pip install mfeprimer-py3

Using git (optional):

git clone https://github.com/Ulises-Rosas/mfeprimer-py3.git
cd mfeprimer-py3
python3 setup.py install

# Index the database
IndexDb.py test/test.rna
# Run MFEprimer
MFEprimer.py -i test/p.fa -d test/test.rna

Check original repo (https://github.com/quwubin/MFEprimer-2.0) for further details about features, outcomes and license agreement.

Wubin Qu, Yang Zhou, Yanchun Zhang, Yiming Lu, Xiaolei Wang, Dongsheng Zhao, Yi Yang and Chenggang Zhang*. MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity. Nucleic Acids Res. 2012 (accepted).
Wubin Qu, Zhiyong Shen, Dongsheng Zhao, Yi Yang and Chenggang Zhang. (2009) MFEprimer: multiple factor evaluation of the specificity of PCR primers, Bioinformatics, 25(2), 276-278.

This version

0.1.2

Jul 23, 2020

0.1.1

Nov 25, 2019

0.1

Nov 25, 2019

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Uploaded Jul 23, 2020 Source

Uploaded Jul 23, 2020 Python 3

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Upload date: Jul 23, 2020
Size: 7.8 MB
Tags: Python 3
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Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.4.0.post20200518 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.7.7