Metagenomics Framework
Project description
The aim of this library [1] is to provide a series of useful modules and packages to make it easier to build custom pipelines for metagenomics or any kind of bioinformatics analysis. It integrates other well known python libraries in bioinformatics, like HTSeq, pysam, numpy and scipy.
A pipeline is provided, for variation study of metagenomic samples.
A discussion mailing list is available at mgkit-users.
Citing
Rubino, F. and Creevey, C.J. 2014. MGkit: Metagenomic Framework For The Study Of Microbial Communities. . Available at: figshare [doi:10.6084/m9.figshare.1269288].
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