MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II
Project description
MHCnuggets
| Branch | Travis CI build status |
|---|---|
master |
 |
develop |
 |
richel |
 |
Welcome to MHCnuggets! Presumably you're here to do some peptide-MHC prediction and not because you were hungry.
Usage
For an overview of how to use MHCnuggets please refer to the Jupyter notebook
called user_guide.ipynb in the repository
If you would like to use MHCnuggets as a docker container, there are several options:
Installation
MHCnuggets is pip installable as:
pip install mhcnuggets
Required pacakges:
- numpy
- scipy
- scikit-learn
- pandas
- keras
- tensorflow
- varcode
You might want to check if the Keras backend is configured to use the Tensorflow backend.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
mhcnuggets-2.4.1.tar.gz
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