Skip to main content
Help the Python Software Foundation raise $60,000 USD by December 31st!  Building the PSF Q4 Fundraiser

MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II

Project description

# MHCnuggets

Welcome to MHCnuggets! Presumably you’re here to do some peptide-MHC prediction and not because you were [hungry](https://www.mcdonalds.com/us/en-us/product/chicken-mcnuggets-4-piece.html).

### Usage ### For an overview of how to use MHCnuggets please refer to the Jupyter notebook called user_guide.ipynb in the repository

If you would like to use MHCnuggets as a docker container, there are several options:

  1. [MHCnuggets with command line interface](https://github.com/KarchinLab/mhcnuggets/wiki/Creating-a-mhcnuggets-docker-container-with-command-line-interface)
  2. [MHCnuggets with Jupyter Notebook interface](https://github.com/KarchinLab/mhcnuggets/wiki/Creating-a-mhcnuggets-docker-container-with-Jupyter-Notebook-interface)
  3. [MHCnuggets container for batch operations](https://github.com/KarchinLab/mhcnuggets/wiki/Creating-and-running-the-MHCnuggets-batch-container)

### Installation ###

MHCnuggets is pip installable as: `bash pip install mhcnuggets `

Required pacakges:

  • numpy
  • scipy
  • scikit-learn
  • pandas
  • tensorflow
  • keras

You might want to check if the Keras backend is configured to use the Tensforflow backend.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for mhcnuggets, version 2.3.3
Filename, size File type Python version Upload date Hashes
Filename, size mhcnuggets-2.3.3-py2-none-any.whl (33.3 MB) File type Wheel Python version py2 Upload date Hashes View
Filename, size mhcnuggets-2.3.3.tar.gz (33.1 MB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page