Quantile normalization of microarray data.
Project description
Documentation
microarray-quantilenorm documentation
Description
This is an implementation of quantile normalization for microarray data analysis.
Usage
python quantile_normalization CSVmicroarray-quantilenorm will then do the following:
Output a list of expression values for genes of interest in each sample to stdout.
Create a PDF and PNG file graphing the distribution for each sample both before and after normalization.
Restrictions
1.) Each CSV file must contain the same gene set.
2.) Each gene must be unique.
Example:
> ABCD1 5.675 > ABCD2 3.456 > ABCD3 5.432
Requirements
Matplotlib = 1.4.3
Scipy = 0.5.1
Installation
pip install microarray-quantilenorm
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