micronuclAI-labeling 0.1.0

GUI tool for labeling micronuclei images

micronuclAI labeling tool

Installation

pip install micronuclAI-labeling

Requirements

• Python >= 3.9
• numpy
• matplotlib
• scikit-image
• PySimpleGUI
• mask2bbox

Usage

To launch micronuclAI labeling tool, run the following command:

python -m micronuclai_labeling --input path/to/image --mask path/to/mask --out path/to/outfile.csv

Once the tool is launched, you can use the following keyboard shortcuts:

The tool works by pressing any of the keys from 0-9:

The key 0 for no micro-nuclei present.
The keys 1-9 for the number of observed micro-nuclei in the image.
The key r is used to go back one image (in case any labeling mistake occurs).

NOTE: Labeling doesn't have to be done in one session, it can be resumed later on.
NOTE: Once labeling is complete the tool will not initiate.
NOTE: Output, Input and Mask paths are required and must be the same in order to resume labeling.