Python module for using MIROSLAV files as file-like objects with seamless preprocessing. MIROSLAV is a FOSS tool for monitoring activity of laboratory rodents.
Project description
mirofile - Your buddy for dealing with raw MIROSLAV data
What is it?
MIROSLAV (Multicage InfraRed Open Source Locomotor Activity eValuator) is a platform for non-invasive monitoring of circadian locomotor activity in laboratory rodents. All of its hardware and software components are described in the paper: #url
This mirofile library, acting as a file-like object, loads raw MIROSLAV files containing experimental data and parses them into a sequence of lists, each containing appropriately-typed timestamps and sensor readings, which can then be turned into a pandas data frame by the user.
A script which exemplifies the use of this library can also be found in the MIROSLAV paper's data repository: #url.
How to install?
mirofile is available on PyPi can be installed with pip:
pip install mirofile
Dependencies
tqdm- can be also be installed withpip
License
The code is distributed under GPLv3.
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