mite-extras 1.0.0

Parsing, conversion, and validation functionality for Minimum Information about a Tailoring Enzyme (MITE) files.

mite_extras

Validation and auxiliary functionality for MITE entries.

Attention: this program has only been tested with Ubuntu Linux.

Installation

With hatch from GitHub

• Install python 3.12.x
• Install hatch (e.g. with pipx install hatch)
• Download or clone the repository
• Run hatch -v env create

Quick Start: Example

Run with hatch:

To validate MITE entries or update them to a new schema version

• hatch run mite_extras -i input/ -o output/ -fout json

For devs

• Install developer dependencies with hatch -v env create dev
• Initialize pre-commit with hatch run dev:pre-commit install
• Run tests with hatch run dev:pytest
• Run CLI with hatch run dev:mite_extras and the appropriate options
• If necessary, remove the environment again with hatch env remove dev