mkdocs-snakemake-rule-plugin 0.4.0

MkDocs Plugin used to extrace rule information, to generate code and tables.

MkDocs Snakemake Rule

MkDocs Plugin used to extract rule information.

Installation

To use this plugin, install it with pip in the same environment as MkDocs:

pip install mkdocs-snakemake-rule-plugin

Config

Then add the following entry to the MkDocs config file:

plugins:
  - snakemake-rule:
      rule_folders:
        - 'workflow/rules'
      schemas:
        - 'workflow/schemas/rules.schema.yaml'

Tag

format

Format of tags are:

• #SNAKEMAKE_RULE_SOURCE__filename__rulename# : for source code extraction
• #SNAKEMAKE_RULE_TABLE__filename__rulename# : for table generation

Tab parts:

• first section identifies if rule source or table should be created
• filename is where the rule is stored, can be without '.skm'
• rulename is the rule that will be extract

Usage

Add tags to your target file and they will be replaced with rule source or tables

MkDocs Markdown example

# Rule information
## Source 
#SNAKEMAKE_RULE_SOURCE__fastp__fastp_pe#

## Parameters
#SNAKEMAKE_RULE_TABLEE__fastp__fastp_pe#