mlrl-boomer 0.11.0

A scikit-learn implementation of BOOMER - an algorithm for learning gradient boosted multi-label classification rules

Important links: Documentation | Issue Tracker | Changelog | Contributors | Code of Conduct | License

This software package provides the official implementation of BOOMER - an algorithm for learning gradient boosted multi-output rules that uses gradient boosting for learning an ensemble of rules that is built with respect to a specific multivariate loss function. It integrates with the popular scikit-learn machine learning framework.

The problem domains addressed by this algorithm include the following:

• Multi-label classification: The goal of multi-label classification is the automatic assignment of sets of labels to individual data points, for example, the annotation of text documents with topics.
• Multi-output regression: Multivariate regression problems require to predict for more than a single numerical output variable.

To provide a versatile tool for different use cases, great emphasis is put on the efficiency of the implementation. Moreover, to ensure its flexibility, it is designed in a modular fashion and can therefore easily be adjusted to different requirements. This modular approach enables implementing different kind of rule learning algorithms. For example, this project does also provide a Separate-and-Conquer (SeCo) algorithm based on traditional rule learning techniques that are particularly well-suited for learning interpretable models.

References

The algorithm was first published in the following paper. A preprint version is publicly available here.

Michael Rapp, Eneldo Loza Mencía, Johannes Fürnkranz Vu-Linh Nguyen and Eyke Hüllermeier. Learning Gradient Boosted Multi-label Classification Rules. In: Proceedings of the European Conference on Machine Learning and Knowledge Discovery in Databases (ECML-PKDD), 2020, Springer.

If you use the algorithm in a scientific publication, we would appreciate citations to the mentioned paper. An overview of publications that are concerned with the BOOMER algorithm, together with information on how to cite them, can be found in the section References of the documentation.

Functionalities

The algorithm that is provided by this project currently supports the following core functionalities for learning ensembles of boosted classification or regression rules:

• Decomposable or non-decomposable loss functions can be minimized in expectation.
• L1 and L2 regularization can be used.
• Single-output, partial, or complete heads can be used by rules, i.e., they can predict for a single output, a subset of the available outputs, or all of them. Predicting for multiple outputs simultaneously enables to model local dependencies between them.
• Various strategies for predicting scores, binary labels or probabilities are available, depending on whether a classification or regression model is used.
• Isotonic regression models can be used to calibrate marginal and joint probabilities predicted by a classification model.
• Rules can be constructed via a greedy search or a beam search. The latter may help to improve the quality of individual rules.
• Sampling techniques and stratification methods can be used for learning new rules on a subset of the available training examples, features, or output variables.
• Shrinkage (a.k.a. the learning rate) can be adjusted for controlling the impact of individual rules on the overall ensemble.
• Fine-grained control over the specificity/generality of rules is provided via hyper-parameters.
• Incremental reduced error pruning can be used for removing overly specific conditions from rules and preventing overfitting.
• Post- and pre-pruning (a.k.a. early stopping) allows to determine the optimal number of rules to be included in an ensemble.
• Sequential post-optimization may help improving the predictive performance of a model by reconstructing each rule in the context of the other rules.
• Native support for numerical, ordinal, and nominal features eliminates the need for pre-processing techniques such as one-hot encoding.
• Handling of missing feature values, i.e., occurrences of NaN in the feature matrix, is implemented by the algorithm.

Runtime and Memory Optimizations

In addition, the following features that may speed up training or reduce the memory footprint are currently implemented:

• Unsupervised feature binning can be used to speed up the evaluation of a rule's potential conditions when dealing with numerical features.
• Gradient-based label binning (GBLB) can be used for assigning the labels included in a multi-label classification data set to a limited number of bins. This may speed up training significantly when minimizing a non-decomposable loss function using rules with partial or complete heads.
• Sparse feature matrices can be used for training and prediction. This may speed up training significantly on some data sets.
• Sparse ground truth matrices can be used for training. This may reduce the memory footprint in case of large data sets.
• Sparse prediction matrices can be used for storing predicted labels. This may reduce the memory footprint in case of large data sets.
• Sparse matrices for storing gradients and Hessians can be used if supported by the loss function. This may speed up training significantly on data sets with many output variables.
• Multi-threading can be used for parallelizing the evaluation of a rule's potential refinements across several features, updating the gradients and Hessians of individual examples in parallel, or obtaining predictions for several examples in parallel.

Documentation

An extensive user guide, as well as an API documentation for developers, is available at https://mlrl-boomer.readthedocs.io. If you are new to the project, you probably want to read about the following topics:

• Instructions for installing the software package or building the project from source.
• Examples of how to use the algorithm in your own Python code or how to use the command line API.
• An overview of available parameters.

A collection of benchmark datasets that are compatible with the algorithm are provided in a separate repository.

For an overview of changes and new features that have been included in past releases, please refer to the changelog.

License

This project is open source software licensed under the terms of the MIT license. We welcome contributions to the project to enhance its functionality and make it more accessible to a broader audience. A frequently updated list of contributors is available here.

All contributions to the project and discussions on the issue tracker are expected to follow the code of conduct.