mltools 1.0.8

New examples and geojson tools.

Tools for fast prototyping of object detection and classification solutions on DG imagery. Relies heavily on popular machine learning (ML) toolkits such as scikit-learn and deep learning toolkits such as keras. It also includes a collection of auxiliary tools necessary for pre- and post- ML processing. These are:

• data_extractors: get pixels and metadata from georeferenced imagery; uses geoio (https://github.com/digitalglobe/geoio);

• features: functions to derive features from pixels;

• geojson_tools: functions to manipulate geojson files.

• crowdsourcing: interface with Tomnod to obtain training/test/target data and to write machine output to Tomnod DB;

Example code can be found in /examples. The examples can be used as a guideline to create object detection/classification workflows which involve one or more of the following steps:

1. retrieve training, test and target data from the Tomnod database;

2. train the algorithm;

3. test the algorithm on the test data and compute accuracy metrics;

4. deploy the algorithm on the target data for detection or classification;

5. write results back to the Tomnod database.

Steps 1 or 5 can be omitted if data is available from a source other than Tomnod or if results do not need to be written back to Tomnod.

Installation/Usage

For Ubuntu, install conda with the following commands (choose default options at prompt):

wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
bash Miniconda2-latest-Linux-x86_64.sh

For OS X, install conda with the following commands (choose default options at prompt):

wget https://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh
bash Miniconda2-latest-MacOSX-x86_64.sh

Then run:

bash

so that modifications in your .bashrc take effect.

Create a conda environment:

conda create -n env python ipython numpy scipy gdal libgdal=2 git

Activate the environment:

source activate env

Upgrade pip (if required):

pip install pip --upgrade

Install mltools:

pip install mltools

Optional: you can install the current version of the master branch with:

pip install git+https://github.com/kostasthebarbarian/mltools

Keep in mind that the master branch is constantly under development.

If installation fails for some of the dependencies, (try to) install them with conda:

conda install <dependency_name>

You can now copy the scripts found in /examples in your project directory or create your own. Keep in mind that the imagery has to be in your project folder and it should have the same name as the image_name property in the geojson. Imagery in the format required by a MLA (e.g., pansharpened, multi-spectral or orthorectified) can be obtained with the gbdxtools package (https://github.com/digitalglobe/gbdxtools).

To exit your conda virtual environment:

source deactivate

Development

Activate the conda environment:

source activate env

Clone the repo:

git clone https://github.com/kostasthebarbarian/mltools

cd mltools

Install the requirements:

pip install -r requirements.txt

Please follow this python style guide: https://google.github.io/styleguide/pyguide.html. 80-90 columns is fine.

To exit your conda virtual environment:

source deactivate

Comments

Here is a slide my initial ideas on mltools:

https://docs.google.com/drawings/d/1tKSgFMp0lLd7Abne8CdOhb1PbdJfgCz5x9XkLwDeET0/edit?usp=sharing

The vision is to use the solutions created with mltools as part of a Crowd+Machine system along the lines of this document:

https://docs.google.com/document/d/1hf82I_jDNGc0NdopXxW9RkbQjLOOGkV4lU5kdM5tqlA/edit?usp=sharing