Utilities for working with SBML models.
Project description
# mod_sbml
mod_sbml implements utilities for working with metabolic models in SBML format [http://sbml.org],
that include:
- model annotation with identifiers from:
* the KEGG database [http://www.genome.jp/kegg],
* the ChEBI Ontology [http://www.ebi.ac.uk/chebi/],
* the 'cellular component' branch of the Gene Ontology [http://geneontology.org/];
- model serialization to csv format [https://en.wikipedia.org/wiki/Comma-separated_values];
- submodel extraction.
mod_sbml also includes utilities for parsing ontologies in OBO flat file format [https://github.com/owlcollab/oboformat].
mod_sbml uses the libsbml package [http://sbml.org/Software/libSBML] for manipulation of SBML files.
mod_sbml implements utilities for working with metabolic models in SBML format [http://sbml.org],
that include:
- model annotation with identifiers from:
* the KEGG database [http://www.genome.jp/kegg],
* the ChEBI Ontology [http://www.ebi.ac.uk/chebi/],
* the 'cellular component' branch of the Gene Ontology [http://geneontology.org/];
- model serialization to csv format [https://en.wikipedia.org/wiki/Comma-separated_values];
- submodel extraction.
mod_sbml also includes utilities for parsing ontologies in OBO flat file format [https://github.com/owlcollab/oboformat].
mod_sbml uses the libsbml package [http://sbml.org/Software/libSBML] for manipulation of SBML files.
