MOGpy 0.0.5

Python lib for molecular genetic

Python lib for molecular genetic

Install from pip

pip3 install MOGpy

Install from source

git clone https://github.com/Lukas0025/MOGpy.git
cd MOGpy
make install

Getting started

simple example

import MOGpy

chromA = MOGpy.BioChromosome.fromStr("AATTCTAAACGCGAAACGGTTGACATGTGGGTTGGAGCC")
chromB = MOGpy.BioChromosome.fromStr("AA")
chromC = chromA * chromB

# show chromosome
chromC.show()

# show histogram
chromC.hist()

# calculate complement
chromD = chromC.complement()

# calculate reversed complement
chromE = chromC.reverse().complement()

# print all chromosomes
print(chromA.seq())
print(chromB.seq())
print(chromC.seq())
print(chromD.seq())
print(chromE.seq())

Getting help

• Examples in examples dir
• Issues: https://github.com/Lukas0025/MOGpy/issues

Reporting bugs and contributing

• Want to report a bug or request a feature? Please open an issue.
• Want to help us with build? Contact me

Licensing

MOGpy is licensed under GPL