Insert SVGs into matplotlib figures
Project description
molcloud
This package draws molecules (or RNA, thanks to @Shunsuke-1994) in a big canvas packed together. See examples below.
Install
Make sure you have pygraphviz installed
pip install molcloud
Usage
molcloud [smiles-file]
and the output will go to cloud.png
. You can specify a few things too:
molcloud [smiles-file] --output-file [output-file] --width 10 --node-size 25
Use molcloud --help
for complete options. smiles-file
should contain smiles, one per line like:
O=C(OC)C=1C=CC2=NC=C(C(=O)OCC)C(NCC(O)C)=C2C1
O=C1C2=NC=CC3=C(OC)C=4OCOC4C(C=5C=C(OC)C(OC)=C(OC)C15)=C23
Adjust width as you add more molecules. The drawing is always square (sorry).
RNA Install
Thanks to @Shunsuke-1994! To install layout RNA, install the extra packages:
pip install molcloud[rna]
RNA Usage
rnacloud [fasta-file]
where fasta-file
should contain sequence and bracket notations, three lines per 1 sequence like:
>seq_0
UUCCAGCACCUGAUGUUCGAAUUUAAAUCGGCUCAACGAG
(((.((((.....)))).)))......(((......))).
Molecule Example
RNA Example
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
molcloud-0.2.0.tar.gz
(5.2 kB
view hashes)