Python client for the Molgenis EMX2 API
Project description
Installation
pip install molgenis_emx2_pyclient
How to use
Within your Python project import the class Client and use it as a context manager
from molgenis_emx2_pyclient import Client
username = 'username'
password = '...'
with Client('https://example.molgeniscloud.org') as client:
client.signin(username, password)
# Retrieve signin information
print(client.status)
""" Output:
Host: https://example.molgeniscloud.org
Status: Signed in
Schemas:
CatalogueOntologies
catalogue
ExampleSchema
...
Version: v8.214.1
"""
# Retrieve data from a table on a schema
data = client.get(schema='ExampleSchame', table='Cohorts')
Development
Clone the molgenis-emx2
repository from GitHub
git clone git@github.com:molgenis/molgenis-emx2.git
Change the working directory to .../tools/pyclient
Create a virtual Python environment
On macOS:
python -m venv venv
On Linux:
python3.11 -m venv venv
On Windows:
py -3.11 venv venv
Activate the virtual environment
On macOS and Linux:
source venv/bin/activate
On Windows:
.venv\Scripts\activate.bat
Install the script dependencies
pip install -r requirements.txt
Build
(venv) $ python -m build
(venv) $ pip install dist/molgenis_emx2_pyclient*.whl
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Close
Hashes for molgenis_emx2_pyclient-8.223.0.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 67c66253ab642f01f6e5e0e85af5bfd3c3a637dac8c24c8ebe30630761482a6e |
|
MD5 | 3356b62683116b5c700f1d7921ad65ac |
|
BLAKE2b-256 | dc9b394bc38592bce76bd66d60437bf4299ace64f21c770845b2bdbd8467ba28 |
Close
Hashes for molgenis_emx2_pyclient-8.223.0-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0ae5be7386ecbcd328184f2885c86d941f30d9c4f7cecafcc98342a6c7da1a4b |
|
MD5 | 6958544198725866342931725e418a9e |
|
BLAKE2b-256 | 8c4995af22d79c7a4085d90e8457b999a2ba17a97a8fec1b7840f3dead069ebf |