Python client for the Molgenis EMX2 API
Project description
Installation
pip install molgenis_emx2_pyclient
How to use
Within your Python project import the class Client and use it as a context manager
from molgenis_emx2_pyclient import Client
username = 'username'
password = '...'
with Client('https://example.molgeniscloud.org') as client:
client.signin(username, password)
# Retrieve signin information
print(client.status)
""" Output:
Host: https://example.molgeniscloud.org
Status: Signed in
Schemas:
CatalogueOntologies
catalogue
ExampleSchema
...
Version: v8.214.1
"""
# Retrieve data from a table on a schema
data = client.get(schema='ExampleSchame', table='Cohorts')
Development
Clone the molgenis-emx2
repository from GitHub
git clone git@github.com:molgenis/molgenis-emx2.git
Change the working directory to .../tools/pyclient
Create a virtual Python environment
On macOS:
python -m venv venv
On Linux:
python3.11 -m venv venv
On Windows:
py -3.11 venv venv
Activate the virtual environment
On macOS and Linux:
source venv/bin/activate
On Windows:
.venv\Scripts\activate.bat
Install the script dependencies
pip install -r requirements.txt
Build
(venv) $ python -m build
(venv) $ pip install dist/molgenis_emx2_pyclient*.whl
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Close
Hashes for molgenis_emx2_pyclient-8.224.6.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | f4b9d8a326f319c7e7c5f91b0d063fb996da78a50cdf8d4e1452b1604ebd2ea4 |
|
MD5 | 5db32ae061d5d8ebbb9b9d4d8afc84fe |
|
BLAKE2b-256 | 118062820d05de8634162905062f0415ea2b3aa4e7ecec5d1a543a21096e3762 |
Close
Hashes for molgenis_emx2_pyclient-8.224.6-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 42aaef8872b25fc1003d9084153d968eca27507dc1baa170b6dff7e73c4912e8 |
|
MD5 | 4d857260ad84a899568583044138b916 |
|
BLAKE2b-256 | 36a26f15f34e5bb264bc581143b816a98c616fb91a252bb1905301f9fd301cd4 |