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A framework and associated tools to design, verify and analyze performance of MONAI apps

Project description

project-monai

💡 If you want to know more about MONAI Deploy WG vision, overall structure, and guidelines, please read https://github.com/Project-MONAI/monai-deploy first.

MONAI Deploy App SDK

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

Features

  • Build medical imaging inference applications using a flexible, extensible & usable Pythonic API
  • Easy management of inference applications via programmable Directed Acyclic Graphs (DAGs)
  • Built-in operators to load DICOM data to be ingested in an inference app
  • Out-of-the-box support for in-proc PyTorch based inference
  • Easy incorporation of MONAI based pre and post transformations in the inference application
  • Package inference application with a single command into a portable MONAI Application Package
  • Locally run and debug your inference application using App Runner

Installation

To install the current release, you can simply run:

pip install monai-deploy-app-sdk  # '--pre' to install a pre-release version.

Getting Started

pip install monai-deploy-app-sdk  # '--pre' to install a pre-release version.

# Clone monai-deploy-app-sdk repository for accessing examples.
git clone https://github.com/Project-MONAI/monai-deploy-app-sdk.git
cd monai-deploy-app-sdk

# Install necessary dependencies for simple_imaging_app
pip install scikit-image

# Execute the app locally
python examples/apps/simple_imaging_app/app.py -i examples/apps/simple_imaging_app/brain_mr_input.jpg -o output

# Package app (creating MAP Docker image), using `-l DEBUG` option to see progress.
monai-deploy package examples/apps/simple_imaging_app -t simple_app:latest -l DEBUG

# Run the app with docker image and an input file locally
## Copy a test input file to 'input' folder
mkdir -p input && rm -rf input/*
cp examples/apps/simple_imaging_app/brain_mr_input.jpg input/
## Launch the app
monai-deploy run simple_app:latest input output

Examples and notebook tutorials are located at Project-MONAI/monai-deploy-app-sdk.

User guide is available at docs.monai.io.

Contributing

For guidance on making a contribution to MONAI Deploy App SDK, see the contributing guidelines.

Community

To participate in the MONAI Deploy WG, please review https://github.com/Project-MONAI/MONAI/wiki/Deploy-Working-Group.

Join the conversation on Twitter @ProjectMONAI or join our Slack channel.

Ask and answer questions over on MONAI Deploy App SDK's GitHub Discussions tab.

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