Tool for analyzing cell closeness in spatial transcriptomic data

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License: MIT License (MIT License Copyright (c) 2022 Immunitas Therapeutics Permission is hereby granted, free of charge...)

Author: Dillon Scott

Tags MERFISH, MERSCOPE, RNA-seq, cell interaction, monkeybread, scanpy, single-cell, spatial analysis, spatial transcriptomics

Requires: Python >=3.7

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Project description

monkeybread

Tool for analyzing cell closeness in spatial transcriptomic data

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Avatar for dillydally414 from gravatar.com dillydally414 Avatar for mbernste from gravatar.com mbernste

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License: MIT License (MIT License Copyright (c) 2022 Immunitas Therapeutics Permission is hereby granted, free of charge...)

Author: Dillon Scott

Tags MERFISH, MERSCOPE, RNA-seq, cell interaction, monkeybread, scanpy, single-cell, spatial analysis, spatial transcriptomics

Requires: Python >=3.7

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Release history Release notifications | RSS feed

1.0.3

1.0.2

1.0.1

0.6.0

0.5.0

0.4.4

0.4.3

0.4.2

0.4.1

0.4.0

0.3.5

0.3.4

0.3.3

0.3.2 yanked

Reason this release was yanked:

mb.util.contact_count is not accurate

0.3.1

0.3.0

0.2.2

0.2.1

0.2.0

0.1.7

0.1.6

0.1.5

This version

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.3

0.0.2b0 pre-release

0.0.1b0 pre-release

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