the Monod package fits CME models to sequencing data.
Project description
Monod: a package for CME inference from seq data
This repository contains the current version of the Monod package, which implements procedures for fitting and analyzing stochastic models of transcription and sequencing. The description of the package's functionality and several applications are given in the preprint.
Examples and tutorials are given at the example repository. For theoretical background, see Gorin & Pachter 2022. For usage instructions, see the readthedocs website. For a sample workflow applied a small dataset, see the Colaboratory notebook.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file monod-0.2.9.0.tar.gz
.
File metadata
- Download URL: monod-0.2.9.0.tar.gz
- Upload date:
- Size: 61.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.12.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | c872f22e9765111bf5e61d6dfd272411b86b14788b110a540d51b8c075f95413 |
|
MD5 | 1484c2dc6ccfdd9e8d51086b03aadc3e |
|
BLAKE2b-256 | 9c2346895c0cd73a6eb2aa44a801a69b6dfab28f3c8931a36f842cd711259dbd |
File details
Details for the file monod-0.2.9.0-py3-none-any.whl
.
File metadata
- Download URL: monod-0.2.9.0-py3-none-any.whl
- Upload date:
- Size: 64.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.12.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | ad2c71b016e257181871f1359afbf71a136943c3fae8e0b04951c374a62639e7 |
|
MD5 | ecf888c51431a41dd9507ebe4a240c99 |
|
BLAKE2b-256 | 8aca9d7cc9b827ead3905ee2a1c5e853dd69ec3bb329c8253121fbbf12e29054 |