Stoichiometric metabolic modelling

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <3.11
Classifiers

Project description

moped

DOI pipeline status coverage report Documentation Status PyPi Code style: black Checked with mypy Downloads

Installation

You can install moped using pip

pip install moped

However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods

If you are using conda or mamba, you can install blast from bioconda:

conda install -c bioconda blast==2.12.0 mamba install -c bioconda blast==2.12.0

If you want to install BLAST yourself:

  • download the latest blast version from NCBI
  • Extract the downloaded folder to a path of your liking
  • Add blast to your path e.g. by adding the following line to your .bashrc
    • export PATH="your_blast_directory/bin:$PATH"

Documentation

Check out our tutorial on readthedocs

Contributing

All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide

License

moped is licensed under GPL 3

Issues and support

If you experience issues using the software please contact us through our issues page.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <3.11
Classifiers

Release history Release notifications | RSS feed

1.13.88

1.13.87

1.13.86

1.13.85

1.13.84

1.13.83

1.13.82

1.13.81

1.13.80

1.13.79

1.13.78

1.13.77

1.13.76

1.13.75

1.13.74

1.13.73

1.13.72

1.13.71

1.13.70

1.13.69

1.13.68

1.13.67

1.13.66

1.13.65

1.13.64

1.13.63

1.13.62

1.13.61

1.13.60

1.13.59

1.13.58

1.13.57

1.13.56

1.13.55

1.13.54

1.13.53

1.13.52

1.13.51

1.13.50

1.13.49

1.13.48

1.13.47

1.13.46

1.13.45

1.13.44

1.13.43

1.13.42

1.13.41

1.13.40

1.13.39

1.13.38

1.13.37

1.13.36

1.13.35

1.13.34

1.13.33

1.13.32

1.13.31

1.13.30

1.13.29

1.13.28

1.13.27

1.13.26

1.13.25

1.13.24

1.13.23

1.13.22

1.13.21

1.13.20

1.13.19

1.13.18

1.13.17

1.13.16

1.13.15

1.13.14

1.13.13

1.13.12

1.13.11

1.13.10

1.13.9

1.13.8

1.13.7

1.13.6

1.13.5

1.13.4

1.13.3

1.13.2

1.13.1

1.13.0

1.12.26

1.12.25

1.12.24

1.12.23

1.12.22

1.12.21

1.12.20

1.12.19

1.12.18

1.12.17

1.12.16

1.12.15

1.12.14

1.12.13

This version

1.12.12

1.12.11

1.12.10

1.12.9

1.12.8

1.12.7

1.12.6

1.12.5

1.12.4

1.12.3

1.12.2

1.12.1

1.12.0

1.11.5

1.11.3

1.11.2

1.11.1

1.11.0

1.10.2

1.10.1

1.10.0

1.9.18

1.9.17

1.9.16

1.9.15

1.9.14

1.9.13

1.9.12

1.9.11

1.9.10

1.9.9

1.9.8

1.9.7

1.9.6

1.9.5

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.7.2

1.7.1

1.7.0

1.6.8

1.6.7

1.6.6

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6

1.5

1.4

1.3

1.2

1.1

1.0

1rc1 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

moped-1.12.12.tar.gz (46.1 kB view details)

Uploaded Source

Built Distribution

moped-1.12.12-py3-none-any.whl (49.5 kB view details)

Uploaded Python 3

File details

Details for the file moped-1.12.12.tar.gz.

File metadata

  • Download URL: moped-1.12.12.tar.gz
  • Upload date:
  • Size: 46.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.0b3 CPython/3.9.13 Linux/5.4.109+

File hashes

Hashes for moped-1.12.12.tar.gz
Algorithm Hash digest
SHA256 728f6d4e985930927916190e071c96c5983bccb03c371bd4be9196f2f8b7524d
MD5 6bc30473fd3049db21e9534ec7ee24ba
BLAKE2b-256 bd5826cc4a37abcd4671708baa9d8394b81dcf111641028d8450265560593165

See more details on using hashes here.

File details

Details for the file moped-1.12.12-py3-none-any.whl.

File metadata

  • Download URL: moped-1.12.12-py3-none-any.whl
  • Upload date:
  • Size: 49.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.0b3 CPython/3.9.13 Linux/5.4.109+

File hashes

Hashes for moped-1.12.12-py3-none-any.whl
Algorithm Hash digest
SHA256 f1f409c5b102302eb5d52c93280cf9d504561b85c434b6a362b2aca13b25a6a4
MD5 936754fde94330bbf91fe164a6dc76b8
BLAKE2b-256 9a6cf588527f17526a6d1096f6b28f5d1178aed88deec11ecef050c4687d33f3

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page