Stoichiometric metabolic modelling

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <3.11
Classifiers

Project description

moped

DOI pipeline status coverage report Documentation Status PyPi Code style: black Checked with mypy Downloads

Installation

You can install moped using pip

pip install moped

However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods

If you are using conda or mamba, you can install blast from bioconda:

conda install -c bioconda blast==2.12.0 mamba install -c bioconda blast==2.12.0

If you want to install BLAST yourself:

  • download the latest blast version from NCBI
  • Extract the downloaded folder to a path of your liking
  • Add blast to your path e.g. by adding the following line to your .bashrc
    • export PATH="your_blast_directory/bin:$PATH"

Documentation

Check out our tutorial on readthedocs

Contributing

All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide

License

moped is licensed under GPL 3

Issues and support

If you experience issues using the software please contact us through our issues page.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <3.11
Classifiers

Release history Release notifications | RSS feed

1.13.88

1.13.87

1.13.86

1.13.85

1.13.84

1.13.83

1.13.82

1.13.81

1.13.80

1.13.79

1.13.78

1.13.77

1.13.76

1.13.75

1.13.74

1.13.73

1.13.72

1.13.71

1.13.70

1.13.69

1.13.68

1.13.67

1.13.66

1.13.65

1.13.64

1.13.63

1.13.62

1.13.61

1.13.60

1.13.59

1.13.58

1.13.57

1.13.56

1.13.55

1.13.54

1.13.53

1.13.52

1.13.51

1.13.50

1.13.49

1.13.48

1.13.47

1.13.46

1.13.45

1.13.44

1.13.43

1.13.42

1.13.41

1.13.40

1.13.39

1.13.38

1.13.37

1.13.36

1.13.35

1.13.34

1.13.33

1.13.32

1.13.31

1.13.30

1.13.29

1.13.28

1.13.27

1.13.26

1.13.25

1.13.24

1.13.23

1.13.22

1.13.21

1.13.20

1.13.19

1.13.18

1.13.17

1.13.16

1.13.15

1.13.14

1.13.13

1.13.12

1.13.11

1.13.10

1.13.9

1.13.8

1.13.7

1.13.6

1.13.5

1.13.4

1.13.3

1.13.2

1.13.1

1.13.0

1.12.26

1.12.25

1.12.24

1.12.23

1.12.22

This version

1.12.21

1.12.20

1.12.19

1.12.18

1.12.17

1.12.16

1.12.15

1.12.14

1.12.13

1.12.12

1.12.11

1.12.10

1.12.9

1.12.8

1.12.7

1.12.6

1.12.5

1.12.4

1.12.3

1.12.2

1.12.1

1.12.0

1.11.5

1.11.3

1.11.2

1.11.1

1.11.0

1.10.2

1.10.1

1.10.0

1.9.18

1.9.17

1.9.16

1.9.15

1.9.14

1.9.13

1.9.12

1.9.11

1.9.10

1.9.9

1.9.8

1.9.7

1.9.6

1.9.5

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.7.2

1.7.1

1.7.0

1.6.8

1.6.7

1.6.6

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6

1.5

1.4

1.3

1.2

1.1

1.0

1rc1 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

moped-1.12.21.tar.gz (46.1 kB view details)

Uploaded Source

Built Distribution

moped-1.12.21-py3-none-any.whl (49.5 kB view details)

Uploaded Python 3

File details

Details for the file moped-1.12.21.tar.gz.

File metadata

  • Download URL: moped-1.12.21.tar.gz
  • Upload date:
  • Size: 46.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.4.109+

File hashes

Hashes for moped-1.12.21.tar.gz
Algorithm Hash digest
SHA256 b9df13c70722f576799df2b6d5c880d5fffc1ff14a11382ce082e61b9334c3f2
MD5 f67a0a6de41608cea97a502bdc89bfba
BLAKE2b-256 c9be818ff8e113851f226404a76f3d8b9b5f8d17533a7a419e06429cd944871d

See more details on using hashes here.

File details

Details for the file moped-1.12.21-py3-none-any.whl.

File metadata

  • Download URL: moped-1.12.21-py3-none-any.whl
  • Upload date:
  • Size: 49.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.4.109+

File hashes

Hashes for moped-1.12.21-py3-none-any.whl
Algorithm Hash digest
SHA256 2ec1c20b55a0450f80abb126ffbe64730d52d1c6405fc4c36a3a9e15ff3151b5
MD5 6e320ce7f9e1e712737a34ba74651325
BLAKE2b-256 261760a125bbe1c7ce9a3c0979ebd5cab4073e6c6758477f3b189566b74004a5

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page