Stoichiometric metabolic modelling

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <4.0
Classifiers

Project description

moped

DOI pipeline status coverage report Documentation Status PyPi Code style: black Checked with mypy Downloads

Installation

You can install moped using pip

pip install moped

However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods

If you are using conda or mamba, you can install blast from bioconda:

conda install -c bioconda blast==2.12.0 mamba install -c bioconda blast==2.12.0

If you want to install BLAST yourself:

  • download the latest blast version from NCBI
  • Extract the downloaded folder to a path of your liking
  • Add blast to your path e.g. by adding the following line to your .bashrc
    • export PATH="your_blast_directory/bin:$PATH"

Documentation

Check out our tutorial on readthedocs

Contributing

All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide

License

moped is licensed under GPL 3

Issues and support

If you experience issues using the software please contact us through our issues page.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <4.0
Classifiers

Release history Release notifications | RSS feed

1.13.88

1.13.87

1.13.86

1.13.85

1.13.84

1.13.83

1.13.82

1.13.81

1.13.80

1.13.79

1.13.78

1.13.77

1.13.76

1.13.75

1.13.74

1.13.73

1.13.72

1.13.71

1.13.70

1.13.69

1.13.68

1.13.67

1.13.66

1.13.65

1.13.64

1.13.63

1.13.62

1.13.61

1.13.60

1.13.59

1.13.58

1.13.57

1.13.56

1.13.55

1.13.54

1.13.53

1.13.52

1.13.51

1.13.50

1.13.49

1.13.48

1.13.47

1.13.46

1.13.45

1.13.44

1.13.43

1.13.42

1.13.41

1.13.40

1.13.39

1.13.38

1.13.37

1.13.36

1.13.35

1.13.34

1.13.33

1.13.32

1.13.31

1.13.30

1.13.29

1.13.28

1.13.27

1.13.26

1.13.25

1.13.24

1.13.23

1.13.22

1.13.21

1.13.20

1.13.19

1.13.18

1.13.17

1.13.16

1.13.15

1.13.14

1.13.13

1.13.12

1.13.11

1.13.10

1.13.9

1.13.8

1.13.7

1.13.6

1.13.5

1.13.4

1.13.3

This version

1.13.2

1.13.1

1.13.0

1.12.26

1.12.25

1.12.24

1.12.23

1.12.22

1.12.21

1.12.20

1.12.19

1.12.18

1.12.17

1.12.16

1.12.15

1.12.14

1.12.13

1.12.12

1.12.11

1.12.10

1.12.9

1.12.8

1.12.7

1.12.6

1.12.5

1.12.4

1.12.3

1.12.2

1.12.1

1.12.0

1.11.5

1.11.3

1.11.2

1.11.1

1.11.0

1.10.2

1.10.1

1.10.0

1.9.18

1.9.17

1.9.16

1.9.15

1.9.14

1.9.13

1.9.12

1.9.11

1.9.10

1.9.9

1.9.8

1.9.7

1.9.6

1.9.5

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.7.2

1.7.1

1.7.0

1.6.8

1.6.7

1.6.6

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6

1.5

1.4

1.3

1.2

1.1

1.0

1rc1 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

moped-1.13.2.tar.gz (46.2 kB view details)

Uploaded Source

Built Distribution

moped-1.13.2-py3-none-any.whl (49.5 kB view details)

Uploaded Python 3

File details

Details for the file moped-1.13.2.tar.gz.

File metadata

  • Download URL: moped-1.13.2.tar.gz
  • Upload date:
  • Size: 46.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.4.109+

File hashes

Hashes for moped-1.13.2.tar.gz
Algorithm Hash digest
SHA256 15b71ac03759209bafcb19ab6d0bcbbde311ad00a564664c35908e82967fdd26
MD5 984244c182a8978f57a781b9be495520
BLAKE2b-256 8396d95ed2b405ecff308ef9a3be036e1850a722ce4ef3dc13bc5e55ebf9821b

See more details on using hashes here.

File details

Details for the file moped-1.13.2-py3-none-any.whl.

File metadata

  • Download URL: moped-1.13.2-py3-none-any.whl
  • Upload date:
  • Size: 49.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.4.109+

File hashes

Hashes for moped-1.13.2-py3-none-any.whl
Algorithm Hash digest
SHA256 c81ea2043341c77d35a077a19cbce94017a2ff3f8d9bee97deb38909c0bb7006
MD5 e07ac4f2d2bbf3dab81e5fe21a790b60
BLAKE2b-256 161d8f6df466ea83255431c683dd6cc3e9d0c5a101ef4a0bebdbec939030280d

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page