Stoichiometric metabolic modelling

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <4.0
Classifiers

Project description

moped

DOI pipeline status coverage report Documentation Status PyPi Code style: black Checked with mypy Downloads

Installation

You can install moped using pip

pip install moped

However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods

If you are using conda or mamba, you can install blast from bioconda:

conda install -c bioconda blast==2.12.0 mamba install -c bioconda blast==2.12.0

If you want to install BLAST yourself:

  • download the latest blast version from NCBI
  • Extract the downloaded folder to a path of your liking
  • Add blast to your path e.g. by adding the following line to your .bashrc
    • export PATH="your_blast_directory/bin:$PATH"

Documentation

Check out our tutorial on readthedocs

Contributing

All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide

License

moped is licensed under GPL 3

Issues and support

If you experience issues using the software please contact us through our issues page.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python >=3.8, <4.0
Classifiers

Release history Release notifications | RSS feed

1.13.88

1.13.87

1.13.86

1.13.85

1.13.84

1.13.83

1.13.82

1.13.81

1.13.80

1.13.79

1.13.78

1.13.77

1.13.76

1.13.75

1.13.74

1.13.73

1.13.72

1.13.71

1.13.70

1.13.69

1.13.68

1.13.67

1.13.66

1.13.65

1.13.64

1.13.63

1.13.62

1.13.61

1.13.60

1.13.59

1.13.58

1.13.57

1.13.56

1.13.55

1.13.54

1.13.53

1.13.52

1.13.51

1.13.50

1.13.49

1.13.48

1.13.47

1.13.46

1.13.45

1.13.44

1.13.43

1.13.42

1.13.41

1.13.40

1.13.39

1.13.38

1.13.37

1.13.36

1.13.35

1.13.34

1.13.33

1.13.32

1.13.31

1.13.30

1.13.29

1.13.28

1.13.27

1.13.26

This version

1.13.25

1.13.24

1.13.23

1.13.22

1.13.21

1.13.20

1.13.19

1.13.18

1.13.17

1.13.16

1.13.15

1.13.14

1.13.13

1.13.12

1.13.11

1.13.10

1.13.9

1.13.8

1.13.7

1.13.6

1.13.5

1.13.4

1.13.3

1.13.2

1.13.1

1.13.0

1.12.26

1.12.25

1.12.24

1.12.23

1.12.22

1.12.21

1.12.20

1.12.19

1.12.18

1.12.17

1.12.16

1.12.15

1.12.14

1.12.13

1.12.12

1.12.11

1.12.10

1.12.9

1.12.8

1.12.7

1.12.6

1.12.5

1.12.4

1.12.3

1.12.2

1.12.1

1.12.0

1.11.5

1.11.3

1.11.2

1.11.1

1.11.0

1.10.2

1.10.1

1.10.0

1.9.18

1.9.17

1.9.16

1.9.15

1.9.14

1.9.13

1.9.12

1.9.11

1.9.10

1.9.9

1.9.8

1.9.7

1.9.6

1.9.5

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.7.2

1.7.1

1.7.0

1.6.8

1.6.7

1.6.6

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6

1.5

1.4

1.3

1.2

1.1

1.0

1rc1 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

moped-1.13.25.tar.gz (46.2 kB view details)

Uploaded Source

Built Distribution

moped-1.13.25-py3-none-any.whl (49.5 kB view details)

Uploaded Python 3

File details

Details for the file moped-1.13.25.tar.gz.

File metadata

  • Download URL: moped-1.13.25.tar.gz
  • Upload date:
  • Size: 46.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.4.109+

File hashes

Hashes for moped-1.13.25.tar.gz
Algorithm Hash digest
SHA256 61194ed96853a0e0105344cb825748acfaec1be61d92ca490e3e961178b26418
MD5 df43fb1c2aed6c327987b8a0eac275ed
BLAKE2b-256 311ca8b9de4c97786cdfd71ea29155ba7c7c57661b8d5d8bd64d2054a30cbd98

See more details on using hashes here.

File details

Details for the file moped-1.13.25-py3-none-any.whl.

File metadata

  • Download URL: moped-1.13.25-py3-none-any.whl
  • Upload date:
  • Size: 49.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.4.109+

File hashes

Hashes for moped-1.13.25-py3-none-any.whl
Algorithm Hash digest
SHA256 7c6cdd60ab917514cd23ca3c8b2abe27018635da64b46be86a0dfb94ef52735a
MD5 22a571ad3d4ec7607e4b7d07a602faa2
BLAKE2b-256 d9e5e373aaabd6f1cab88e4905ac0c06b2de8d178b8b55c003a3131eb3bd4f15

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page