Stoichiometric metabolic modelling

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python <4.0, >=3.8
Classifiers

Project description

moped

DOI pipeline status coverage report Documentation Status PyPi Code style: black Checked with mypy security: bandit Downloads

Installation

You can install moped using pip

pip install moped

However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods

If you are using conda or mamba, you can install blast from bioconda:

conda install -c bioconda blast==2.12.0 mamba install -c bioconda blast==2.12.0

If you want to install BLAST yourself:

  • download the latest blast version from NCBI
  • Extract the downloaded folder to a path of your liking
  • Add blast to your path e.g. by adding the following line to your .bashrc
    • export PATH="your_blast_directory/bin:$PATH"

Documentation

Check out our tutorial on readthedocs

Contributing

All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide

License

moped is licensed under GPL 3

Issues and support

If you experience issues using the software please contact us through our issues page.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for marvin.vanaalst from gravatar.com marvin.vanaalst Avatar for qtb from gravatar.com qtb

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GPL-3.0-or-later)
  • Author: Marvin van Aalst
  • Maintainer: Marvin van Aalst
  • Tags modelling, stoichiometric, metacyc, blast
  • Requires: Python <4.0, >=3.8
Classifiers

Release history Release notifications | RSS feed

1.13.88

1.13.87

1.13.86

1.13.85

1.13.84

1.13.83

1.13.82

1.13.81

1.13.80

1.13.79

1.13.78

1.13.77

1.13.76

1.13.75

1.13.74

1.13.73

1.13.72

1.13.71

1.13.70

1.13.69

1.13.68

1.13.67

1.13.66

1.13.65

This version

1.13.64

1.13.63

1.13.62

1.13.61

1.13.60

1.13.59

1.13.58

1.13.57

1.13.56

1.13.55

1.13.54

1.13.53

1.13.52

1.13.51

1.13.50

1.13.49

1.13.48

1.13.47

1.13.46

1.13.45

1.13.44

1.13.43

1.13.42

1.13.41

1.13.40

1.13.39

1.13.38

1.13.37

1.13.36

1.13.35

1.13.34

1.13.33

1.13.32

1.13.31

1.13.30

1.13.29

1.13.28

1.13.27

1.13.26

1.13.25

1.13.24

1.13.23

1.13.22

1.13.21

1.13.20

1.13.19

1.13.18

1.13.17

1.13.16

1.13.15

1.13.14

1.13.13

1.13.12

1.13.11

1.13.10

1.13.9

1.13.8

1.13.7

1.13.6

1.13.5

1.13.4

1.13.3

1.13.2

1.13.1

1.13.0

1.12.26

1.12.25

1.12.24

1.12.23

1.12.22

1.12.21

1.12.20

1.12.19

1.12.18

1.12.17

1.12.16

1.12.15

1.12.14

1.12.13

1.12.12

1.12.11

1.12.10

1.12.9

1.12.8

1.12.7

1.12.6

1.12.5

1.12.4

1.12.3

1.12.2

1.12.1

1.12.0

1.11.5

1.11.3

1.11.2

1.11.1

1.11.0

1.10.2

1.10.1

1.10.0

1.9.18

1.9.17

1.9.16

1.9.15

1.9.14

1.9.13

1.9.12

1.9.11

1.9.10

1.9.9

1.9.8

1.9.7

1.9.6

1.9.5

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.7.2

1.7.1

1.7.0

1.6.8

1.6.7

1.6.6

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6

1.5

1.4

1.3

1.2

1.1

1.0

1rc1 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

moped-1.13.64.tar.gz (46.4 kB view details)

Uploaded Source

Built Distribution

moped-1.13.64-py3-none-any.whl (49.8 kB view details)

Uploaded Python 3

File details

Details for the file moped-1.13.64.tar.gz.

File metadata

  • Download URL: moped-1.13.64.tar.gz
  • Upload date:
  • Size: 46.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.15.154+

File hashes

Hashes for moped-1.13.64.tar.gz
Algorithm Hash digest
SHA256 a89a9af03775fb1b19f2f9964badce9c0d176447bb818e6843127ef9b717de3f
MD5 0f8c8008b48311d9973660e1e33ddba7
BLAKE2b-256 4d8bc3a3fb6e39e8d02c4b2d41687bec0ba28a3e2e9c606cdacfbb13336299f8

See more details on using hashes here.

File details

Details for the file moped-1.13.64-py3-none-any.whl.

File metadata

  • Download URL: moped-1.13.64-py3-none-any.whl
  • Upload date:
  • Size: 49.8 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.2.2 CPython/3.10.6 Linux/5.15.154+

File hashes

Hashes for moped-1.13.64-py3-none-any.whl
Algorithm Hash digest
SHA256 79c9406193f62a3d3c293a39462c3ea06211c7403d8bed4b19d9742aa4592a05
MD5 7afeda43a37f92b208721b37bb7b1a05
BLAKE2b-256 3170d49cf6ce4b9961d104773e760e459b0aa9a2326d8bf46dddd9fb3ba0bfce

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page