Multi-omic peptide generator
Project description
Multi-Omics Peptide Generator
moPepGen (multi-omics peptide generator) uses data from one or more omics experiments and calls variant peptides as custom databases for proteogenomic library search.
moPepGen takes genomic and transcriptomic variants such as single nucleotide variants (SNPs or SNVs), small insertions/deletions (indels), gene fusion, alternative splicing, RNA circularization and RNA editing events, and generates noncanonical peptides affected by the variants.
Installation
Install directly from GitHub
pip install git+ssh://git@github.com/uclahs-cds/package-moPepGen.git
Documentation
See here
Citation
- Zhu, C. et al. moPepGen: Rapid and Comprehensive Proteoform Identification. 2024.03.28.587261 Preprint at https://doi.org/10.1101/2024.03.28.587261 (2024).
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
mopepgen-1.4.0.tar.gz
(212.0 kB
view details)
Built Distribution
mopepgen-1.4.0-py3-none-any.whl
(271.8 kB
view details)
File details
Details for the file mopepgen-1.4.0.tar.gz
.
File metadata
- Download URL: mopepgen-1.4.0.tar.gz
- Upload date:
- Size: 212.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.0.0 CPython/3.12.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9af7a09ae1476a9c300c764d33f624fbcacb6fb7bab6a8ce160fe9c6f88e04e4 |
|
MD5 | cbb3ec5d69af8b8819c7865fe4e43d0b |
|
BLAKE2b-256 | 3c8ea34255cdfaca364a2fcd650eee181f5dfa0936bc5f2002fcf7ad0f7da97d |
File details
Details for the file mopepgen-1.4.0-py3-none-any.whl
.
File metadata
- Download URL: mopepgen-1.4.0-py3-none-any.whl
- Upload date:
- Size: 271.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.0.0 CPython/3.12.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 492cdaecf7987e7acd95252af0b2a89a76cccfc7066c294bcee65eb9dac7ed8c |
|
MD5 | 16a2729bec6b029997ad81801448000d |
|
BLAKE2b-256 | ed7dd4a0ecd27a59f234c621727957c5a6c38326c677bbdcfb157dfcd036d9e5 |