A lightweight python package to download neuronal morphologies

Project description

morphapi

Overview

Morphapi is a lightweight python package for downloading neurons morphological reconstructions from publicly available datasets.

Neuromorph api can be used to download data from the following sources:

Neuromorph relies on the neurom package from the BlueBrain project (github) to reconstruct morphology from .swc files and on vtkplotter to create 3d rendering from morphological data.

Installation

morphapi will be published on Pypi soon, meanwhile you can install with:

    pip install git+https://github.com/brainglobe/morphapi.git

References

Juan Palacios, lidakanari, Eleftherios Zisis, MikeG, Liesbeth Vanherpe, Jean-Denis Courcol, & Oren Amsalem. (2016, December 19). BlueBrain/NeuroM: v1.2.0 (Version v1.2.0). Zenodo. http://doi.org/10.5281/zenodo.209498
M. Musy et al. "vtkplotter, a python module for scientific visualization and analysis of 3D objects and point clouds based on VTK (Visualization Toolkit)", Zenodo, 10 February 2019, doi: 10.5281/zenodo.2561402.
Winnubst, J. et al. (2019) Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain, Cell 179: 268-281

Project details

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0.3.0

Sep 3, 2024

0.2.5

May 2, 2024

0.2.4

Apr 26, 2024

0.2.3

Mar 19, 2024

0.2.1

Nov 16, 2023

0.2.0

Nov 14, 2023

0.1.11

Nov 14, 2023

0.1.10

Jun 17, 2023

0.1.9

May 23, 2023

0.1.8

Feb 3, 2023

0.1.7

Jun 3, 2022

0.1.6

May 6, 2022

0.1.5

May 4, 2022

0.1.4

Apr 4, 2022

0.1.3.0

Jun 27, 2021

0.1.2.6

May 17, 2021

0.1.2.4

Oct 29, 2020

0.1.2.2

Oct 29, 2020

0.1.2.1

Oct 29, 2020

0.1.2.0

Oct 28, 2020

0.1.1.9

Sep 30, 2020

0.1.1.8

Sep 13, 2020

0.1.1.6

Aug 16, 2020

0.1.1.5

Aug 16, 2020

0.1.1.3

Jun 18, 2020

0.1.1.2

Jun 7, 2020

0.1.1.1

Jun 7, 2020

0.1.0

Jun 7, 2020

0.0.8

Jun 4, 2020

0.0.8b0 pre-release

Jun 7, 2020

0.0.7

May 10, 2020

0.0.7a0 pre-release

May 10, 2020

0.0.6

May 10, 2020

0.0.6rc0 pre-release

May 10, 2020

0.0.6b0 pre-release

May 10, 2020

0.0.5

May 10, 2020

0.0.4b0 pre-release

May 9, 2020

0.0.3

May 9, 2020

0.0.2

May 9, 2020

This version

0.0.1

May 9, 2020

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