morphops 0.1.4

Geometric morphometrics operations in python

Welcome to Morphops!

Morphops implements common operations and algorithms for geometric morphometrics, in python 3.

Dependencies

• numpy

Installation

pip install morphops

Usage

import morphops as mops
# Create 3 landmark sets, each having 5 landmarks in 2 dimensions.
A = [[0,0],[2,0],[2,2],[1,3],[0,2]]
B = [[0.1,-0.1],[2,0],[2.3,1.8],[1,3],[0.4,2]]
C = [[-0.1,-0.1],[2.1,0],[2,1.8],[0.9,3.1],[-0.4,2.1]]

# Perform Generalized Procrustes alignment to align A, B, C.
# :func:`gpa` is in the procrustes module.
res = mops.gpa([A,B,C])

# res['X0_ald'] contains the aligned A, B, C.
# res['X0_mu'] contains the mean of the aligned A, B, C.