motif-finder
A novel approach to motif identification in proteins
Important
This code is in BETA and features may change without notice.
Usage
Provide a text query file, which is required. If not using manual motifs, also provide one more motif files using the -m flag to generate motifs dynamically.
pip install motiffinder
# main program
motiffinder <query file> -m <optional motif file>
# for help
motiffind -h
# for version
motiffinder -v
Or, clone this repository and set up with:
pip install -r requirements.text
python -m motiffinder <query file> -m <optional motif file>
# alternately, use setup.py to get the motiffinder package
python setup.py install
Contributors
Written by Carl Vitzthum and Prof. Andrea Tilden
1 maintainer
Release files for motiffinder 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| motiffinder-0.0.2.tar.gz | 21.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| motiffinder-0.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 46.5 kB
Release files / motiffinder-0.0.2.tar.gz
| Download URL | motiffinder-0.0.2.tar.gz |
|---|---|
| Size | 21.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / motiffinder-0.0.2-py3-none-any.whl
| Download URL | motiffinder-0.0.2-py3-none-any.whl |
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| Size | 25.0 kB |
| Tags | Python 3 |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.6.5
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