A tool for heart segmentation and congenital heart defect detection in mice.
Project description
Napari plugin for MouseCHD project
Tool for heart segmentation and congenital heart defect detection in mice.
Installation
From Bundle
(1) Install Napari by following this instruction https://napari.org/stable/tutorials/fundamentals/installation.html#install-as-a-bundled-app
(2) Install mousechd-napari
plugin:
* Run Napari
* Plugins
--> Install/Uninstall Plugins ...
--> Search for mousechd_napari
--> Click on install
.
From PyPI
pip install mousechd_napari
From source
git clone https://github.com/hnguyentt/mousechd-napari
cd mousechd-napari
conda create -n mousechd_napari python=3.7 # create virtualenv
conda activate mousechd_napari
pip install -e . # install
How to use
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