mousechd-napari 0.0.1a0

A tool for heart segmentation and congenital heart defect detection in mice.

Napari plugin for MouseCHD project

Tool for heart segmentation and congenital heart defect detection in mice.

Installation

From Bundle

(1) Install Napari by following this instruction https://napari.org/stable/tutorials/fundamentals/installation.html#install-as-a-bundled-app (2) Install mousechd-napari plugin: * Run Napari * Plugins --> Install/Uninstall Plugins ... --> Search for mousechd_napari --> Click on install.

From PyPI

pip install mousechd_napari

From source

git clone https://github.com/hnguyentt/mousechd-napari
cd mousechd-napari
conda create -n mousechd_napari python=3.7 # create virtualenv
conda activate mousechd_napari
pip install -e . # install

How to use