Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels.
usage: mp3treesim [-h] [-i | -u | -g] [-c CORES] [--labeled-only] [--exclude [EXCLUDE [EXCLUDE ...]]] TREE TREE MP3 tree similarity measure positional arguments: TREE Paths to the trees optional arguments: -h, --help show this help message and exit -i Run MP3-treesim in Intersection mode. -u Run MP3-treesim in Union mode. -g Run MP3-treesim in Geometric mode. -c CORES, --cores CORES Number of cores to be used in computation. --labeled-only Ingore nodes without "label" attribute. The trees will be interpred as partially-label trees. --exclude [EXCLUDE [EXCLUDE ...]] String(s) of comma separated labels to exclude from computation. If only one string is provided the labels will be excluded from both trees. If two strings are provided they will be excluded from the respective tree. E.g.: --exclude "A,D,E" will exclude labels from both trees; --exclude "A,B" "C,F" will exclude A,B from Tree 1 and C,F from Tree 2; --exclude "" "C" will exclude and C from Tree 2 and nothing from Tree 1
A detailed description of the module is available on our github repo.
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