The mpbn Python module offers a simple implementation of reachability and attractor analysis (minimal trap spaces) in Most Permissive Boolean Networks (doi:10.1038/s41467-020-18112-5). The mpbn Python module also offers a Most Permissive simulator, which provides trajectory sampling and computes attractor propensities (see paper Variable-Depth Simulation of Most Permissive Boolean Networks for more details).
It is built on the minibn module from colomoto-jupyter which allows importation of Boolean networks in many formats. See http://colomoto.org/notebook.
Installation
CoLoMoTo Notebook environment
mpbn is distributed in the CoLoMoTo docker.
Using pip
pip install mpbn
Using conda
conda install -c colomoto -c potassco -c daemontus mpbn
Usage
Command line
- Enumeration of fixed points and attractors:
mpbn -h
- Simulation:
mpbn-sim -h
Python interface
Documentation is available at https://mpbn.readthedocs.io.
Example notebooks:
- https://nbviewer.org/github/bnediction/mpbn/tree/master/examples/
- http://doi.org/10.5281/zenodo.3719097
For the simulation:
1 maintainer
Metadata
1 maintainer
Release files for mpbn 4.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| mpbn-4.4.tar.gz | 18.9 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| mpbn-4.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 42.5 kB
Release files / mpbn-4.4.tar.gz
| Download URL | mpbn-4.4.tar.gz |
|---|---|
| Size | 18.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
f190175a93f5c495b701e9f5ea6bf905ed66210a4d744923e5935ee6a0148412
|
|
BLAKE2b-256 checksum How to use checksums |
e5b752a3a85009fdb63b1187418f17f7dfa567e27f39af78efc2ca93b2e8bdfd
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.14.5
|
Release files / mpbn-4.4-py3-none-any.whl
| Download URL | mpbn-4.4-py3-none-any.whl |
|---|---|
| Size | 23.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
e92935c519916ea436ac0e458a39b09e488801cccd11ea36060a5a39e2a39c0e
|
|
BLAKE2b-256 checksum How to use checksums |
49e15c26cc6457b9ce6e626633313bc9668ade3fef3fc32f29febd0a2e87218e
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.14.5
|
Security for mpbn 4.4
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
