Introduction
This is a collection of handy small tools for analyzing neuroimaging data (esp. high resolution fMRI), which can be used both as a Python package and a set of command line tools. It is a useful augmentation to the AFNI tool chain.
Documentation
The latest mripy documentation is available online.
Installation (in linux/mac)
Install AFNI and FreeSurfer
Please follow the instructions in their official websites (AFNI, FreeSurfer).
Install mripy
Download and install the mripy package:
$ pip install mripySet $PATH for using the package scripts in the terminal. For bash, the commands look like:
$ vi ~/.bashrc
$ export PATH="path/to/mripy/scripts":$PATHThe path could be something like “~/anaconda3/lib/Python3.8/site-packages/mripy/scripts”.
Download and install the dependencies:
$ pip install nibabel deepdishInstall neuropythy docker (for HCP retinotopy altas)
First install docker for your OS, then pull the neuropythy image:
# Pull a particular version
$ docker pull nben/neuropythy@sha256:2541ee29a8d6bc676d9c3622ef4a38a258dd90e06c02534996a1c8354f9ac888
# Give it a tag
$ docker tag b38ebfcf6477 nben/neuropythy:mripyMore information about the HCP retinotopy altas and the neuropythy package can be found in Noah C. Benson’s website.
1 maintainer
Release files for mripy 0.7.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| mripy-0.7.3.tar.gz | 224.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| mripy-0.7.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 474.9 kB
Release files / mripy-0.7.3.tar.gz
| Download URL | mripy-0.7.3.tar.gz |
|---|---|
| Size | 224.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / mripy-0.7.3-py3-none-any.whl
| Download URL | mripy-0.7.3-py3-none-any.whl |
|---|---|
| Size | 250.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/1.11.0 pkginfo/1.9.6 requests/2.31.0 setuptools/68.0.0 requests-toolbelt/1.0.0 tqdm/4.65.0 CPython/3.11.5
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