Introduction
This is a collection of handy small tools for analyzing neuroimaging data (esp. high resolution fMRI), which can be used both as a Python package and a set of command line tools. It is a useful augmentation to the AFNI tool chain.
Documentation
The latest mripy documentation is available online.
Installation (in linux/mac)
Install AFNI and FreeSurfer
Please follow the instructions in their official websites (AFNI, FreeSurfer).
Install mripy
Download and install the mripy package:
$ pip install mripySet $PATH for using the package scripts in the terminal. For bash, the commands look like:
$ vi ~/.bashrc
$ export PATH="path/to/mripy/scripts":$PATHThe path could be something like “~/anaconda3/lib/Python3.8/site-packages/mripy/scripts”.
Download and install the dependencies:
$ pip install nibabel deepdishInstall neuropythy docker (for HCP retinotopy altas)
First install docker for your OS, then pull the neuropythy image:
# Pull a particular version
$ docker pull nben/neuropythy@sha256:2541ee29a8d6bc676d9c3622ef4a38a258dd90e06c02534996a1c8354f9ac888
# Give it a tag
$ docker tag b38ebfcf6477 nben/neuropythy:mripyMore information about the HCP retinotopy altas and the neuropythy package can be found in Noah C. Benson’s website.
1 maintainer
Metadata
1 maintainer
Release files for mripy 0.7.3
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| mripy-0.7.3.tar.gz | 224.8 kB | Without provenance | Details for mripy-0.7.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| mripy-0.7.3-py3-none-any.whl | Python 3 | none | any | Details for mripy-0.7.3-py3-none-any.whl |
Total release size: 474.9 kB
Release files / mripy-0.7.3.tar.gz
| Download URL | mripy-0.7.3.tar.gz |
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Release files / mripy-0.7.3-py3-none-any.whl
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| Tags | Python 3 |
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