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A simple common utils and models package

Project description

A simple common utils and models package for MRI analysis.

## Functions implemented in MRIUtils

### Datasets

  • ACDC: from mriutils.acdc import LoadACDC

  • BraTS: from mriutils.brats import LoadBraTS

  • MRBrainS: from mriutils.mrbrains import LoadMRBrainS

  • H5 files: from mriutils.ic_data import LoadH5

  • Other *.png datasets: from mriutils.pngs import LoadPNGS

### Load and save Files

  • *.npy: from mriutils.tonpy import SaveDataset

  • *.nii/*.nii.gz: from mriutils.tonii import SaveNiiFile

### Models

  • 2D-UNet: from mriutils.unet import UNet

  • 3D-UNet: from mriutils.unet_3d import UNet3D

  • 3D-UNet with Attention: from mriutils.unet_3d_atten import UNet3D_Atten

### Metrics

  • MRI Metrics: from mriutils.metrics import Metrics

### Others

  • Normalization: from mriutils.norm import Normalization

  • Time related: from mriutils.timer import Timer

  • Print logs: from mriutils.logs import Logs

  • Plot lines: from mriutils.plots import Plots

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