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Tools and scripts for visualization and comparison of 3d MRI scans (T1, T2 etc)

Project description

http://joss.theoj.org/papers/10.21105/joss.00897/status.svg https://img.shields.io/pypi/v/mrivis.svg https://api.codacy.com/project/badge/Grade/370b1b78383b40b99eb15ae0490cfbdb https://img.shields.io/badge/say-thanks-ff69b4.svg

mrivis offers:

  • tools for comparison of spatial alignment of two 3D MRI scans (T1, T2, PET etc) using checkerboard plots and other comparison methods
  • classes to develop customizable visualizations of 3D and 4D images
  • additional helper, convenience and utility scripts related to visualization

Full documentation https://raamana.github.io/mrivis/readme.html

A sample gallery of different ways to check alignment is shown below:

docs/flyer_option_matrix.png

Full documentation https://raamana.github.io/mrivis/readme.html

Executable and interactive demo for the visualization classes:

https://mybinder.org/badge.svg

Installation

$ pip install mrivis

If you would like to use the export to GIF from SlicePicker, then install the imageio package as well via pip install imageio

Project details


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