Python package to identify isotope patterns and their formulas
Project description
msaris
Mass Spectrometry Automatic Recognition Integrated Service
Package of classes, methods and function to perform search of isotope patterns, their identification and identifying their formulas
Installation
To install last version from pypi following command can be used
pip install msaris==0.1.8b2
It is also possible to install from cloned repository via sdist installation
python3 setup.py sdist bdist_wheel
It is recommended to run package and associated script in isolated python virtual environment
For creating environment venv or virtualenv can be used
Usage
Example of running isotope pattern recognition presented in example workflow.
Code in jupyter notebook can be adjusted to own .mzML files.
Plotting and report creation in notebook presented as example can be used
in code.
To see examples proceed to example folder
It shall be pointed that current version adjusted for one PdCl2 and CuCl solutions in acetonitrile. Future versions would expand applications for other systems.
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