Implementation of Microbe-Set Enrichment Analysis (MSEA).
Project description
msea: Microbe-Set Enrichment Analysis (MSEA) for functional interpretation of sets of microbial organisms
What is it?
msea a Python package implementing the Microbe-Set Enrichment Analysis pipeline, helping microbiologists make sense of collections microbes via external annotations.
Installation
# from PyPI
pip install msea
Dependencies
Tutorials and Documentations
Please refer to examples or read the full documentation.
Development
For local development:
python setup.py develop
To run tests:
python setup.py test
To build documentation with Sphinx:
cd docs && make html
To build distribution:
python setup.py bdist bdist_wheel
# then upload to PyPI
python -m twine upload dist/*
License
Project details
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