msitrees 0.2

MSI based machine learning algorithms

msitrees

msitrees is a set of machine learning models based on minimum surfeit and inaccuracy decision tree algorithm. The main difference to other CART methods is, that there is no hyperparameters to optimize for base learner. Tree is regularized internally to avoid overfitting by design. Quoting authors of the paper:

To achieve this, the algorithm must automatically understand when growing the decision tree adds needless complexity, and must measure such complexity in a way that is commensurate to some prediction quality aspect, e.g., inaccuracy. We argue that a natural way to achieve the above objectives is to define both the inaccuracy and the complexity using the concept of Kolmogorov complexity.

Installation

With pip

pip install msitrees

From source

git clone https://github.com/xadrianzetx/msitrees.git
cd msitrees
python setup.py install

Windows builds require at least MSVC2015

Quick start

from msitrees.tree import MSIDecisionTreeClassifier
from sklearn.datasets import load_iris
from sklearn.model_selection import cross_val_score

data = load_iris()
clf = MSIDecisionTreeClassifier()
cross_val_score(clf, data['data'], data['target'], cv=10)

# array([1.        , 1.        , 1.        , 0.93333333, 0.93333333,
    #    0.8       , 0.93333333, 0.86666667, 0.8       , 1.        ])

Reference documentation

API documentation is available here.

Zero hyperparameter based approach

MSI based algorithm should have performance comparable to CART decision tree where best hyperparameters were established with some sort of search. We are going to compare MSIRandomForestClassifier with scikit-learn implementation of random forest algorithm with hyperparameters grid searched using optuna. Both algorithms will be limited to 100 estimators, and measured by comparing accuracy on validation set of MNIST dataset.

   import optuna
   from sklearn.ensemble import RandomForestClassifier

   from sklearn.datasets import load_iris
   from sklearn.model_selection import train_test_split
   from sklearn.metrics import accuracy_score

   data = load_digits()
   x_train, x_valid, y_train, y_valid = train_test_split(data['data'], data['target'], random_state=42)

   def objective(trial):
      params = {
          'min_samples_leaf': trial.suggest_int('min_samples_leaf', 2, 10),
          'max_depth': trial.suggest_int('max_depth', 8, 20),
          'min_samples_split': trial.suggest_int('min_samples_split', 2, 10),
          'random_state': 42,
          'n_estimators': 100
      }

      clf = RandomForestClassifier(**params)
      clf.fit(x_train, y_train)
      pred = clf.predict(x_valid)
      score = accuracy_score(y_valid, pred)

      return score

   study = optuna.create_study(direction='maximize')
   study.optimize(objective, n_jobs=-1, show_progress_bar=True, n_trials=500)

   # fit benchmark model on best params
   benchmark = RandomForestClassifier(**study.best_params)
   benchmark = benchmark.fit(x_train, y_train)

   pred = benchmark.predict(x_valid)
   accuracy_score(y_valid, pred)
   # 0.9711111111111111

Since MSI based algorithm has no additional hyperparameters, code is sparse.

   from msitrees.ensemble import MSIRandomForestClassifier

   from sklearn.datasets import load_iris
   from sklearn.model_selection import train_test_split
   from sklearn.metrics import accuracy_score

   data = load_digits()
   x_train, x_valid, y_train, y_valid = train_test_split(data['data'], data['target'], random_state=42)

   clf = MSIRandomForestClassifier(n_estimators=100)
   clf.fit(x_train, y_train)
   pred = msiclf.predict(x_valid)
   accuracy_score(y_valid, pred)
   # 0.9733333333333334

Results for both random forest algorithms are comparable. Furthermore, median depth of a tree estimator is equal for both methods, even though MSI has no explicit parameter controlling tree depth.

   np.median([e.get_depth() for e in benchmark.estimators_])
   # 12.0
   np.median([e.get_depth() for e in clf._estimators])
   # 12.0