Simulate genealogical trees and genomic sequence data using population genetic models

Project description

msprime

msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consistent with a given demographic model) under a range of different models and evolutionary processes. Msprime can also simulate mutations on a given ancestral history (which can be produced by msprime or other programs supporting tskit) under a variety of genome sequence evolution models.

Please see the documentation for more details, including installation instructions.

Research notice

Please note that this repository is participating in a study into sustainability of open source projects. Data will be gathered about this repository for approximately the next 12 months, starting from 2021-06-04.

Data collected will include number of contributors, number of PRs, time taken to close/merge these PRs, and issues closed.

For more information, please visit our informational page or download our participant information sheet.

Project details

Release history Release notifications | RSS feed

This version

1.2.0

May 18, 2022

1.1.1

Feb 10, 2022

1.1.0

Dec 14, 2021

1.0.4

Dec 1, 2021

1.0.3

Nov 13, 2021

1.0.2

Jul 29, 2021

1.0.1

May 10, 2021

1.0.0

Apr 14, 2021

1.0.0b1 pre-release

Apr 1, 2021

1.0.0a6 pre-release

Mar 3, 2021

1.0.0a5 pre-release

Mar 2, 2021

1.0.0a4 pre-release

Feb 1, 2021

1.0.0a3 pre-release

Jan 18, 2021

1.0.0a1 pre-release

Jan 18, 2021

0.7.4

Dec 5, 2019

0.7.3

Aug 3, 2019

0.7.2

Jul 30, 2019

0.7.1

Jun 8, 2019

0.7.1b1 pre-release

May 31, 2019

0.7.0

Feb 22, 2019

0.7.0a1 pre-release

Jan 14, 2019

0.6.2

Dec 4, 2018

0.6.1

Aug 25, 2018

0.6.0

Jun 20, 2018

0.6.0b2 pre-release

Jun 16, 2018

0.6.0b1 pre-release

Jun 15, 2018

0.5.0

Feb 26, 2018

0.5.0b2 pre-release

Feb 2, 2018

0.5.0b1 pre-release

Jan 15, 2018

0.4.0

Oct 7, 2016

0.3.2

Jul 20, 2016

0.3.1

Jun 24, 2016

0.3.0

May 31, 2016

0.2.0

May 5, 2016

0.1.10

Apr 21, 2016

0.1.9

Apr 1, 2016

0.1.8

Feb 17, 2016

0.1.7

Jan 14, 2016

0.1.6

Dec 1, 2015

0.1.6a3 pre-release

Dec 1, 2015

0.1.6a2 pre-release

Dec 1, 2015

0.1.5

Nov 9, 2015

0.1.5a2 pre-release

Nov 9, 2015

0.1.5a1 pre-release

Nov 9, 2015

0.1.4

Sep 8, 2015

0.1.3

Aug 28, 2015

0.1.2

Aug 27, 2015

0.1.2a2 pre-release

Jul 19, 2015

0.1.1

Jun 23, 2015

0.1.1a5 pre-release

Jun 23, 2015

0.1.1a4 pre-release

May 26, 2015

0.1.1a3 pre-release

May 26, 2015

0.1.1a2 pre-release

May 26, 2015

0.1.1a1 pre-release

May 26, 2015

0.1.0a2 pre-release

Mar 19, 2015

0.1.0a1 pre-release

Mar 19, 2015

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Source Distribution

msprime-1.2.0.tar.gz (862.5 kB view hashes)

Uploaded May 18, 2022 source

Built Distributions

msprime-1.2.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (5.8 MB view hashes)

Uploaded May 18, 2022 cp310

msprime-1.2.0-cp310-cp310-macosx_10_15_x86_64.whl (1.4 MB view hashes)

Uploaded May 18, 2022 cp310

msprime-1.2.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (5.8 MB view hashes)

Uploaded May 19, 2022 cp39

msprime-1.2.0-cp39-cp39-macosx_10_15_x86_64.whl (1.4 MB view hashes)

Uploaded May 18, 2022 cp39

msprime-1.2.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (5.8 MB view hashes)

Uploaded May 19, 2022 cp38

msprime-1.2.0-cp38-cp38-macosx_10_15_x86_64.whl (1.4 MB view hashes)

Uploaded May 18, 2022 cp38

msprime-1.2.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (5.7 MB view hashes)

Uploaded May 19, 2022 cp37

msprime-1.2.0-cp37-cp37m-macosx_10_15_x86_64.whl (1.4 MB view hashes)

Uploaded May 18, 2022 cp37

Hashes for msprime-1.2.0.tar.gz

Hashes for msprime-1.2.0.tar.gz
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Hashes for msprime-1.2.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl

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