A fast and accurate coalescent simulator.
Project description
Msprime is a coalescent simulator and library for processing tree-based genetic data. Msprime can simulate the coalescent with recombination over whole chromosomes for hundreds of thousands of samples, and very efficiently process the resulting genealogies using tskit.
If you use msprime in your work, please cite the PLOS Computational Biology paper. See here for full citation details.
Please see the documentation for further details.
Msprime is very portable, and provides a number of installation options. See here for details.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file msprime-1.0.0a5.tar.gz.
File metadata
- Download URL: msprime-1.0.0a5.tar.gz
- Upload date:
- Size: 848.2 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
35bf05447f8897f16ef45b8be2b39bbae444a170d82c3a9ab135946bc056aaeb
|
|
| MD5 |
8de7f85b8be2abe99170a78b73595d9f
|
|
| BLAKE2b-256 |
8093c11146305c767aa8ec1dc9dd44e2210fd3e3b8f26b44b0e821926eeef427
|
File details
Details for the file msprime-1.0.0a5-cp39-cp39-manylinux2010_x86_64.whl.
File metadata
- Download URL: msprime-1.0.0a5-cp39-cp39-manylinux2010_x86_64.whl
- Upload date:
- Size: 5.6 MB
- Tags: CPython 3.9, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
683f4e4d7be596fe7b74d1f51e140fee61fe66f3a5b8bc907c64490bd0855ee5
|
|
| MD5 |
8d9f1327e793a8e0ff9e4097d1f08876
|
|
| BLAKE2b-256 |
81c864d0f60561f78f9e8a278b764959431901898765e74320e54953ab8dcab6
|
File details
Details for the file msprime-1.0.0a5-cp39-cp39-macosx_10_14_x86_64.whl.
File metadata
- Download URL: msprime-1.0.0a5-cp39-cp39-macosx_10_14_x86_64.whl
- Upload date:
- Size: 1.3 MB
- Tags: CPython 3.9, macOS 10.14+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
162cd240f56e68a1f58c53d98d17087849a78c02ba9d8c7094da964c9e976cb0
|
|
| MD5 |
93cdf400ea25ff146d8021fcb7eda317
|
|
| BLAKE2b-256 |
5b580c02333f89fdaf795a2647d3d605b4f79c72ed342e94f16fb8a17b626921
|
File details
Details for the file msprime-1.0.0a5-cp38-cp38-manylinux2010_x86_64.whl.
File metadata
- Download URL: msprime-1.0.0a5-cp38-cp38-manylinux2010_x86_64.whl
- Upload date:
- Size: 5.6 MB
- Tags: CPython 3.8, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
1d9989b61dd8d990a1c098a152b357c6444d090a7f5d24e0161c37b2b8f8b288
|
|
| MD5 |
a6b6026f48f95bc951968d8bed425db6
|
|
| BLAKE2b-256 |
ba10b329cd2f3aff61c31320c2d6cb7559b920dc36b8490bcf384ac566cc4451
|
File details
Details for the file msprime-1.0.0a5-cp38-cp38-macosx_10_14_x86_64.whl.
File metadata
- Download URL: msprime-1.0.0a5-cp38-cp38-macosx_10_14_x86_64.whl
- Upload date:
- Size: 1.3 MB
- Tags: CPython 3.8, macOS 10.14+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
8cd064e370016acdaec1d4b22b7d592e44fbc56dd8bd863948b0af69e8ed45b9
|
|
| MD5 |
877892a5cb09bae0f7b8ff9564fe169c
|
|
| BLAKE2b-256 |
4344f8a4eb573c4edc41f3d21452482a6a643a346468cc2e96769769607e0e4e
|
File details
Details for the file msprime-1.0.0a5-cp37-cp37m-manylinux2010_x86_64.whl.
File metadata
- Download URL: msprime-1.0.0a5-cp37-cp37m-manylinux2010_x86_64.whl
- Upload date:
- Size: 5.6 MB
- Tags: CPython 3.7m, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
82f62d729da5e700cb2a38224bf6258d3173997792ba2d4ab26db0af9a7bf4bc
|
|
| MD5 |
d47b3ba0dcc9c06cc536a7a5507d0f22
|
|
| BLAKE2b-256 |
950af21bf849095327ff63da184656eaaa31f7eb42976f78fb01dc8e0ab5abd0
|
File details
Details for the file msprime-1.0.0a5-cp37-cp37m-macosx_10_14_x86_64.whl.
File metadata
- Download URL: msprime-1.0.0a5-cp37-cp37m-macosx_10_14_x86_64.whl
- Upload date:
- Size: 1.3 MB
- Tags: CPython 3.7m, macOS 10.14+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/53.0.0 requests-toolbelt/0.9.1 tqdm/4.58.0 CPython/3.9.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
974db0bf3324df21a8226097d9ee6e6242704ce9c917b6d4d2c2e0ce9bc31ef0
|
|
| MD5 |
d9f7696aa059486a8449c6731f0aade8
|
|
| BLAKE2b-256 |
fb103619d4f8a8c51a7ba023938b1d9cdd979d7c16f2d06783cefbe5e5bef7bb
|
