Simulate genealogical trees and genomic sequence data using population genetic models
Project description
msprime
msprime
is a population genetics simulator
based on tskit. Msprime can simulate random
ancestral histories for a sample of individuals
(consistent with a given demographic model) under a
range of different models and evolutionary processes. Msprime can
also simulate mutations on a given ancestral
history (which can be produced by msprime or other programs
supporting tskit) under
a variety of genome sequence evolution models.
Please see the documentation for more details, including installation instructions.
Research notice
Please note that this repository is participating in a study into sustainability of open source projects. Data will be gathered about this repository for approximately the next 12 months, starting from 2021-06-04.
Data collected will include number of contributors, number of PRs, time taken to close/merge these PRs, and issues closed.
For more information, please visit our informational page or download our participant information sheet.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Hashes for msprime-1.0.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | d1b90b5cdb7a6a87a8f51460714663cf61dac53324b305ebf2e4836c7002b4fb |
|
MD5 | 558359f80744c1ba0e1ae5fdf677d250 |
|
BLAKE2b-256 | 4e56f047195aed333719ba8ee6256572e69f9ba7a6faf5fa6d6088e8032456e4 |
Hashes for msprime-1.0.2-cp39-cp39-macosx_10_14_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 013df5f04b057306977c72a331f38895ad571152dbb4aa76de8dc9d4dd77ca78 |
|
MD5 | 674fe830f3480142d194b496a69d6623 |
|
BLAKE2b-256 | 167070b6c6057699feedd6c05ec07b1e898f789b8fc7220087c7261768a446b6 |
Hashes for msprime-1.0.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6f1783d78497d6efbe1f43cbb42fd4e386f4f17dfda62aec70c0618cec528ad0 |
|
MD5 | bb35be5211eb073c98f0c2dec845a402 |
|
BLAKE2b-256 | 550e5f978d32844e8c45f80c1e339cac80833e66fdba5dd18759aa5778b69c40 |
Hashes for msprime-1.0.2-cp38-cp38-macosx_10_14_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | e33a58f79ea64fbdf054eec23defc87424e7562f8c867faa97e27cb6f01d09b5 |
|
MD5 | d42599752429acdc476d12598796f252 |
|
BLAKE2b-256 | f9c9b26c7cf1c27d78e914ef39d47eba2baf79f549f7033971472d7fdc8ce00d |
Hashes for msprime-1.0.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | cd386f376125c62f9e42e1268679601eeb2f673d046598142155ff49043f5132 |
|
MD5 | 504875e3a0ec1f5585f2c07de9ae1dc8 |
|
BLAKE2b-256 | a326ab8838f908e67243a13bebbc4a00369afa508df10d9a8fe43cda58f6827f |
Hashes for msprime-1.0.2-cp37-cp37m-macosx_10_14_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 2df8e61ea6a1734e4efa93f782cf9d03c2184bdd4ec3197711ee2e63c641a295 |
|
MD5 | 853fa36b6afc548a5be071ade7537380 |
|
BLAKE2b-256 | 0988562b2dedaf2a63e8b6817185c808a730b76557cf8aa3ca12d37fb9860736 |