Simulate genealogical trees and genomic sequence data using population genetic models
Project description
msprime 
msprime is a population genetics simulator
based on tskit. Msprime can simulate random
ancestral histories for a sample of individuals
(consistent with a given demographic model) under a
range of different models and evolutionary processes. Msprime can
also simulate mutations on a given ancestral
history (which can be produced by msprime or other programs
supporting tskit) under
a variety of genome sequence evolution models.
Please see the documentation for more details, including installation instructions.
Research notice
Please note that this repository is participating in a study into sustainability of open source projects. Data will be gathered about this repository for approximately the next 12 months, starting from 2021-06-04.
Data collected will include number of contributors, number of PRs, time taken to close/merge these PRs, and issues closed.
For more information, please visit our informational page or download our participant information sheet.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file msprime-1.0.4.tar.gz.
File metadata
- Download URL: msprime-1.0.4.tar.gz
- Upload date:
- Size: 835.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
d897c55eb536d37e3369cc95f39aad4847520604420ea1ac40f36cadbf81b9cd
|
|
| MD5 |
859ebdb73d9343a62463496999870dc9
|
|
| BLAKE2b-256 |
ddc844b4ed3090d5db9eaf9f20304d672e8d0f495b65f9cd193b7b05ef7fca78
|
File details
Details for the file msprime-1.0.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.
File metadata
- Download URL: msprime-1.0.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.9, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0a22d671caf20fadd21d66b3e45116bbfa3b35b31e6a5a1b5eebd2f9a07738f8
|
|
| MD5 |
d24c9c05f684ace4acd26798ea264334
|
|
| BLAKE2b-256 |
53343a286b471cbc3018b202487d538436398df0c3850f0670748afb426a16d5
|
File details
Details for the file msprime-1.0.4-cp39-cp39-macosx_10_14_x86_64.whl.
File metadata
- Download URL: msprime-1.0.4-cp39-cp39-macosx_10_14_x86_64.whl
- Upload date:
- Size: 1.4 MB
- Tags: CPython 3.9, macOS 10.14+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
bd5a2ee45c59e0df305a7dccd30433d3b01931d5c10ed790e58c6e48e4423b16
|
|
| MD5 |
d1729b58ca797e96dcfe881878eb0cfd
|
|
| BLAKE2b-256 |
6e1fce4932b7aa9642c99c184f8b6850b08ad23f3668003cbc03ae0e58a19d41
|
File details
Details for the file msprime-1.0.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.
File metadata
- Download URL: msprime-1.0.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.8, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
902fe3ea586b7acd6a9a191ef3278832bdc5fad9204fcc24af20e05cc17fd647
|
|
| MD5 |
1f1309a3fb3f28ae8584850c7a13fd39
|
|
| BLAKE2b-256 |
af1dae9bc2b7699e50d50f505c58d516e8227a4559c71b0e9e96a7aa0fbb9019
|
File details
Details for the file msprime-1.0.4-cp38-cp38-macosx_10_14_x86_64.whl.
File metadata
- Download URL: msprime-1.0.4-cp38-cp38-macosx_10_14_x86_64.whl
- Upload date:
- Size: 1.4 MB
- Tags: CPython 3.8, macOS 10.14+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4b2f0acb3be11e0c4c6297624aaf6cb0c0f7df2ab8b201387f0e417e3eac9879
|
|
| MD5 |
d6874ceb23f235d2a05ee29416192cd5
|
|
| BLAKE2b-256 |
1ae0aa1d38104f9c1dde09a762bd223ad272ece12d10a082599d28feabb3615a
|
File details
Details for the file msprime-1.0.4-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.
File metadata
- Download URL: msprime-1.0.4-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.7m, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
106ec868da9a3526388b230b715046ab40a1642e94b5cd345ede8648f4f31259
|
|
| MD5 |
b1babc4d36160db94fe36435692ff762
|
|
| BLAKE2b-256 |
b10e0e0c576c9008a44cdf462c89ac80ced60dbac51ef0209697f1e839b6d940
|
File details
Details for the file msprime-1.0.4-cp37-cp37m-macosx_10_14_x86_64.whl.
File metadata
- Download URL: msprime-1.0.4-cp37-cp37m-macosx_10_14_x86_64.whl
- Upload date:
- Size: 1.4 MB
- Tags: CPython 3.7m, macOS 10.14+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.7.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
870c0967f1bbfd17f53596f2c762cbf764cb83950234420d1812c49b2420ff6e
|
|
| MD5 |
a1f09b272d9ddddbc57ee4eb3b4d1a31
|
|
| BLAKE2b-256 |
b50847b169fd6eac5cd44a5a24d3c857f330654a479227d730c836b80513e569
|
