Simulate genealogical trees and genomic sequence data using population genetic models

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for benjeffery from gravatar.com benjeffery Avatar for jerome.kelleher from gravatar.com jerome.kelleher

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GNU GPLv3+)
  • Author: Tskit Developers
  • Tags coalescent simulation , population genetics , ms , tree sequence , tskit
  • Requires: Python >=3.9
Classifiers
Report project as malware

Project description

msprime

CircleCI codecov PyPI Downloads Conda Downloads SWH Docs Build Binary wheels Tests

msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consistent with a given demographic model) under a range of different models and evolutionary processes. Msprime can also simulate mutations on a given ancestral history (which can be produced by msprime or other programs supporting tskit) under a variety of genome sequence evolution models.

Please see the documentation for more details, including installation instructions.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for benjeffery from gravatar.com benjeffery Avatar for jerome.kelleher from gravatar.com jerome.kelleher

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+) (GNU GPLv3+)
  • Author: Tskit Developers
  • Tags coalescent simulation , population genetics , ms , tree sequence , tskit
  • Requires: Python >=3.9
Classifiers

Release history Release notifications | RSS feed

1.4.1

1.4.1b1 pre-release

1.4.0

1.4.0b2 pre-release

1.3.4

This version

1.3.3

1.3.2

1.3.1

1.3.0

1.2.0

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

1.0.0b1 pre-release

1.0.0a6 pre-release

1.0.0a5 pre-release

1.0.0a4 pre-release

1.0.0a3 pre-release

1.0.0a1 pre-release

0.7.4

0.7.3

0.7.2

0.7.1

0.7.1b1 pre-release

0.7.0

0.7.0a1 pre-release

0.6.2

0.6.1

0.6.0

0.6.0b2 pre-release

0.6.0b1 pre-release

0.5.0

0.5.0b2 pre-release

0.5.0b1 pre-release

0.4.0

0.3.2

0.3.1

0.3.0

0.2.0

0.1.10

0.1.9

0.1.8

0.1.7

0.1.6

0.1.6a3 pre-release

0.1.6a2 pre-release

0.1.5

0.1.5a2 pre-release

0.1.5a1 pre-release

0.1.4

0.1.3

0.1.2

0.1.2a2 pre-release

0.1.1

0.1.1a5 pre-release

0.1.1a4 pre-release

0.1.1a3 pre-release

0.1.1a2 pre-release

0.1.1a1 pre-release

0.1.0a2 pre-release

0.1.0a1 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

msprime-1.3.3.tar.gz (888.9 kB view details)

Uploaded Source

Built Distributions

If you're not sure about the file name format, learn more about wheel file names.

msprime-1.3.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.7 MB view details)

Uploaded CPython 3.12manylinux: glibc 2.17+ x86-64

msprime-1.3.3-cp312-cp312-macosx_14_0_arm64.whl (1.2 MB view details)

Uploaded CPython 3.12macOS 14.0+ ARM64

msprime-1.3.3-cp312-cp312-macosx_11_0_x86_64.whl (388.0 kB view details)

Uploaded CPython 3.12macOS 11.0+ x86-64

msprime-1.3.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.7 MB view details)

Uploaded CPython 3.11manylinux: glibc 2.17+ x86-64

msprime-1.3.3-cp311-cp311-macosx_14_0_arm64.whl (1.2 MB view details)

Uploaded CPython 3.11macOS 14.0+ ARM64

msprime-1.3.3-cp311-cp311-macosx_11_0_x86_64.whl (386.8 kB view details)

Uploaded CPython 3.11macOS 11.0+ x86-64

msprime-1.3.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.7 MB view details)

Uploaded CPython 3.10manylinux: glibc 2.17+ x86-64

msprime-1.3.3-cp310-cp310-macosx_14_0_arm64.whl (1.2 MB view details)

Uploaded CPython 3.10macOS 14.0+ ARM64

msprime-1.3.3-cp310-cp310-macosx_11_0_x86_64.whl (386.8 kB view details)

Uploaded CPython 3.10macOS 11.0+ x86-64

msprime-1.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.7 MB view details)

Uploaded CPython 3.9manylinux: glibc 2.17+ x86-64

msprime-1.3.3-cp39-cp39-macosx_14_0_arm64.whl (1.2 MB view details)

Uploaded CPython 3.9macOS 14.0+ ARM64

msprime-1.3.3-cp39-cp39-macosx_11_0_x86_64.whl (386.8 kB view details)

Uploaded CPython 3.9macOS 11.0+ x86-64

File details

Details for the file msprime-1.3.3.tar.gz.

File metadata

  • Download URL: msprime-1.3.3.tar.gz
  • Upload date:
  • Size: 888.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/5.1.0 CPython/3.12.4

File hashes

Hashes for msprime-1.3.3.tar.gz
Algorithm Hash digest
SHA256 d8ae798076167f632b8fd7eccd5089faaa84c9034ca69422f886425f94a5b01b
MD5 a811d509007cd9c3caecc09eb1aa4849
BLAKE2b-256 708472a914d91c3e9cea91b8089ddc2a32cc9bdee50eda7e8900be6be70d1fdb

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 2b90effc7a773ab534bd23473c8b99d902daa583b49f971b0bfb03b52e2bec3c
MD5 482545c4cb89a3e7c77c7a0f9e58593e
BLAKE2b-256 a199c98c11f80b40f343396a667e00c07145e0ea271186eea2b4ece1016b895b

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp312-cp312-macosx_14_0_arm64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp312-cp312-macosx_14_0_arm64.whl
Algorithm Hash digest
SHA256 7d8f1eaa9aab5408dc9395b4ceada3b400b6de9c5998a0761bc7129532f7b0bd
MD5 bf32017eb06c54fa31d9913ce7db5cc5
BLAKE2b-256 47ca4723e58bb8501b3b2c2f67ee522db5b6d63862244b4fb6d392cac620ce18

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp312-cp312-macosx_11_0_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp312-cp312-macosx_11_0_x86_64.whl
Algorithm Hash digest
SHA256 53efb584b2687c1e6d4e7f28922a10b04478b57a381731afb6fafc3b8d842b56
MD5 7e6e1d8b2aec0872e64fc767452e6482
BLAKE2b-256 a5b480bc4faa3a559cb256f33150894292a547fadeaa9d413be7374eb1b6997d

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 a3cdbf8d3d8839321425147d11e62f1275951fc4e13c652e4df1d82f7f8b5936
MD5 f41530ec8547327bf884860c0d23ea28
BLAKE2b-256 788a8bf436f4d5714e7204f09c59b2d4f6ec87ff781f1f55dbdf3fc8687130e6

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp311-cp311-macosx_14_0_arm64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp311-cp311-macosx_14_0_arm64.whl
Algorithm Hash digest
SHA256 0de1d80770cc5cc5b9e1b7a6d6100b178f579096b1a1ebf1b61bdd5e4e759252
MD5 bf9916fcf7fe51d1da29137507455d53
BLAKE2b-256 1516d6bc1851baa5e44984841d898920732884a040bbe78772678c4ee174d468

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp311-cp311-macosx_11_0_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp311-cp311-macosx_11_0_x86_64.whl
Algorithm Hash digest
SHA256 ec5982e92b2c26ebd772380fdf83c04daef90b1104367c658b81499fa28b2565
MD5 5b4c545225c1b179a546ce6830497f89
BLAKE2b-256 ec3ca87f9ac6868546b9e8a4922628a02880f541d733c9265d9ba2a75434923e

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 95c4ede6e42f9f4abcafa07bdcee7ad43725b1990281b0a8358c7bb4c3df7dd5
MD5 332b8883490d95f4f8453430f5156a13
BLAKE2b-256 93f20b3301719150327dfee449b9cf92b00e8a050f829d188c7c1e82f0e9d458

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp310-cp310-macosx_14_0_arm64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp310-cp310-macosx_14_0_arm64.whl
Algorithm Hash digest
SHA256 537e5dc8c47365255d2dff2601a78ed35ff257a1d17c6e03b7c0de45ca1254a4
MD5 0bc05f72208d114d1960878ca010c772
BLAKE2b-256 1cee03f83047e12c4be6f7dac54b5424ef3021c49986ce83abb33440d0820dbf

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp310-cp310-macosx_11_0_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp310-cp310-macosx_11_0_x86_64.whl
Algorithm Hash digest
SHA256 c075f9be6906542e17e5d9bc108c08d21e5b5379512f77931ceb7986d2f2acda
MD5 dffc5c474732bacbee6825b93483b3ed
BLAKE2b-256 fdbd6126533c5ec78f62c53da6b2d6964e29c6e17abe9abed0bddaa03b5476aa

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 a88d9ab5fe59beef256f7db60b8c29cc4ee6c0d1cf9f00f92284e012e679c340
MD5 ff4f3ed147473b91755b5529a9d93fe1
BLAKE2b-256 1e9f1a8d2a87571fa8b2fdc0baa8f178ad4e1ec4cc1c1c55bb4e0d30ea3c03cd

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp39-cp39-macosx_14_0_arm64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp39-cp39-macosx_14_0_arm64.whl
Algorithm Hash digest
SHA256 e4f0491312e59cbe041602e462d64c3979e743e4452345d954c9aa9e54378f6b
MD5 06bc20c4c23228b8d53eb088c2423df1
BLAKE2b-256 8a20bc798708a803d52936c103b7b1fe1e2c093f621e952de39e531f66b2f9ac

See more details on using hashes here.

File details

Details for the file msprime-1.3.3-cp39-cp39-macosx_11_0_x86_64.whl.

File metadata

File hashes

Hashes for msprime-1.3.3-cp39-cp39-macosx_11_0_x86_64.whl
Algorithm Hash digest
SHA256 156ecdad1339c13563ab7de68d62a7727456f2011c5596d06188ac624d41a213
MD5 c76bce19af467e6000f3b1edef58c5f2
BLAKE2b-256 87b9cdfb11cefb2b03b916f801116a2fdda3cdea22a7fdf5958782ea3b62b2cf

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page