Project description

Modern C++ Binding for SSW Library

Changes

Add Modern C++ Binding
Use pybind11 Binding
Provide Python api

Installation

$ pip install mssw

Usage

import mssw

reference = "CAGCCTTTCTGACCCGGAAATCAAAATAGGCACAACAAA"
query = "CTGAGCCGGTAAATC"
masklen = 15
aligner = mssw.StripedSmithWaterman.Aligner()
aligner_filter = mssw.StripedSmithWaterman.Filter()
alignment = mssw.StripedSmithWaterman.Alignment()
aligner.Align(query, reference, len(reference), aligner_filter, alignment, masklen)

Project details

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Release history Release notifications | RSS feed

0.1.5

Oct 10, 2022

0.1.4

Oct 10, 2022

0.1.3

Oct 8, 2022

0.1.2

Oct 8, 2022

This version

0.1.1

Oct 7, 2022

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Source Distribution

mssw-0.1.1.tar.gz (79.1 kB view hashes)

Uploaded Oct 7, 2022 Source

Built Distribution

mssw-0.1.1-cp310-cp310-manylinux_2_31_x86_64.whl (203.9 kB view hashes)

Uploaded Oct 7, 2022 CPython 3.10 manylinux: glibc 2.31+ x86-64

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