Maximal Updated Density Examples
Project description
MUD-Examples
Examples for Existence, Uniqueness, and Convergence of Parameter Estimates with Maximal Updated Densities
Authors: Troy Butler & Michael Pilosov
Installation
For Python 3.7-3.12:
pip install mud-examples
To reproduce the results in Michael's thesis, use mud-examples==0.1
. However, this comes with mud==0.0.28
.
Newer versions should still produce the same figures.
TeX is recommended (but not required):
apt-get install -yqq \
texlive-base \
texlive-latex-base \
texlive-latex-extra \
texlive-fonts-recommended \
texlive-fonts-extra \
texlive-science \
latexmk \
dvipng \
cm-super
Quickstart
Generate all of the figures the way they are referenced in the paper:
mud_run_all
The above is equivalent to running all of the examples sequentially:
mud_run_inv
mud_run_lin
mud_run_ode
mud_run_pde
Usage
The mud_run_X
scripts all call the same primary entrypoint, which you can call with the console script mud_examples
.
Here are two examples:
mud_examples --example ode
mud_examples --example lin
and so on. (More on this later, once argparsing is better handled, they might just be entrypoints to the modules themselves rather than a central runner.py
, which really only exists to compare several experiments, so perhaps it warrants renaming to reflect that).
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