Skip to main content

Read and extract images from a DICOM file using GDCM

Project description

mudicom

A python package that validates, reads, and extracts images from a DICOM file.

Requirements

Base:

Validator:

Image:

Quick How To

import mudicom
mu = mudicom.load("mudicom/tests/dicoms/ex1.dcm")

# returns array of data elements as dicts
mu.read()

# returns dict of errors and warnings for DICOM
mu.validate()

# creates image object
img = mu.image()
# returns numpy array
img.numpy()

# using Pillow, saves DICOM image
img.save_as_pil("ex1.jpg")
# using matplotlib, saves DICOM image
img.save_as_plt("ex1_2.jpg")

Documentation

Full documentation is available at https://github.com/neurosnap/mudicom/tree/master/docs (temporary)

Roadmap

  • Extract multiple images from one single DICOM file

  • Publish documentation online

Credits

Written by Eric Bower

Special thanks to Mathieu Malaterre (primary developer for GDCM), of whom without this package would not be possible.

Change Log

v0.0.7, 10-16-2014

  • Fixed python 3 issue with GDCM image encoding

v0.0.6, 09-08-2014

  • Updated README for clarity

  • Created bried roadmap

v0.0.5, 08-14-2014

  • Updated MANIFEST.in to include .rst, I’m a dumbass

v0.0.4, 08-14-2014

  • Removed LICENSE.rst from setup.py

v0.0.3, 08-14-2014

  • PIP cannot read LICENSE.rst for some reason

v0.0.3, 08-14-2014

  • Weird permission issues with the egg

v0.0.2, 08-14-2014

  • Updated packaging description

v0.0.1, 04-04-2014

  • Initial release.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

mudicom-0.0.7.tar.gz (11.5 kB view hashes)

Uploaded source

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page