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present a collection of indexed fasta files as a single source

Project Description

MultiFastaDB opens a set of indexed fasta files and provides ordered lookup of a given accession across all of them. The intent is to simplify accessing a virtual database of sequences that is distributed across multiple files.

>> from multifastafile import MultiFastaDB >> mfdb = MultiFastaDB([‘/a/file.fasta’, ‘/a/dir/of/fastas/’]) >> mfdb.fetch(‘NM_01234.5’, 60, 70) >> mfdb[‘NM_01234.5’][60:70] # (equivalent to the above) >> mfdb.where_is(‘NM_01234.5’)

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0.2.10

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0.2.9

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0.2.8

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0.2.6

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0.2.5

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0.2.4

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0.2.3

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0.2.2

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0.2.1

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0.2.0

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0.1

This version
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0.0.1

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0.2.3dev-654c8696909a

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Filename, size & hash SHA256 hash help File type Python version Upload date
multifastadb-0.0.1-py2.7.egg (1.7 kB) Copy SHA256 hash SHA256 Egg 2.7 Sep 1, 2014
multifastadb-0.0.1.tar.gz (382.8 kB) Copy SHA256 hash SHA256 Source None Sep 1, 2014

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