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Create aggregate bioinformatics analysis reports across many samples and tools

Project description

MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a large number of common bioinformatics tools.

You can install MultiQC from PyPI as follows:

pip install multiqc

Then it’s just a case of going to your analysis directory and running the script:

multiqc .

MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.

The report is created in multiqc_report.html by default. Tab-delimited data files are created in multiqc_data/ to give easy access for downstream processing.

For more detailed instructions, run multiqc -h

See the MultiQC website for documentation and tutorial videos:

MultiQC was written by Phil Ewels ( at SciLifeLab Sweden (

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